Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0211 ATGGAATATTGCATGGAAGGTGCGTTGAAAACATGTTTAAGGAAAGACATGACTGTGAAAGTTAGCCCACAAACCTTCATGGAGGATTTGAACGTCCAAAATGGCACACCTTGCGATGATTTTTTATTCGTGGATAACCTCCTTGACTTCTCGCATGTTGAACAACAACAAGACGAAGAAGAACAGCAACAACAACAACACAAGGAAGGTGAAGGTGAAGGTGAAGGTGAAGATGAAGGCTTTGTTTGTGTCTCTCCTAAAAAAAGCAACGAAATTTGTAACCTTTCTTCTCTCAGACATGAATTTCCCTCTTTGCCCACTAGCGAACTCAGTGTTCCGGAGGATGTTGCTGACTTGGAGTGGTTGTCTAATTTTGTTTCGGATTCCTTCTCGGATTTCCCCACCGTAACAACCACCATGACGGAGAATCCAAATACTTTTTGTGCTGAGAAAGAAGCCAAGCCGTTAAACCCGGTTTTTATTCAACCATGTTTCAAAACCCCGGTTCCGGCAAAGGCAAGGAGCAAGAGAACCCGGTCCGGTATTCGGGTTTGGTCACTCGGTTCACCTTGCTTCACCGAGTCATCAACCAGCTCTACTTCTTCAACCTCCTCTTCTTCCTCACCAACAAGCACTTTGTTAATTTACACCAACTTGGTCCAAAACCTCGACCAGGTTTGTTCACCAGCGAAAAAACCAAAGAAAAGGGTCTCTTCTGACGGCTCGGTTCAGGCTCCACGGCGTTGCAGCCATTGCGGTGTTCAGAAAACCCCTCAGTGGCGAACCGGGCCACTGGGAGCGAAAACTCTCTGCAACGCTTGTGGGGTTAGGTTCAAGTCGGGTCGACTCTTACCCGAATACAGACCAGCTTGTAGCCCTACGTTTTCAACGGAATTGCACTCCAACCACCACCGCAAAGTGCTTGAAATGCGGCGGAAGAAGGAGGGCACCGGTGGTGTTGAGACCGGTTTTGCACCTCCTCCGGTGGTCCCCACTTTTTGA 1002 0.479 MEYCMEGALKTCLRKDMTVKVSPQTFMEDLNVQNGTPCDDFLFVDNLLDFSHVEQQQDEEEQQQQQHKEGEGEGEGEDEGFVCVSPKKSNEICNLSSLRHEFPSLPTSELSVPEDVADLEWLSNFVSDSFSDFPTVTTTMTENPNTFCAEKEAKPLNPVFIQPCFKTPVPAKARSKRTRSGIRVWSLGSPCFTESSTSSTSSTSSSSSPTSTLLIYTNLVQNLDQVCSPAKKPKKRVSSDGSVQAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSTELHSNHHRKVLEMRRKKEGTGGVETGFAPPPVVPTF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0211 333 Coils Coil 53 73 - -
Lan17g0211 333 Pfam GATA zinc finger 249 283 IPR000679 GO:0006355|GO:0043565
Lan17g0211 333 MobiDBLite consensus disorder prediction 55 80 - -
Lan17g0211 333 PIRSF Txn_fac_GATA_plant 19 324 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lan17g0211 333 PANTHER GATA TRANSCRIPTION FACTOR 4 317 - -
Lan17g0211 333 SMART GATA_3 243 297 IPR000679 GO:0006355|GO:0043565
Lan17g0211 333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 243 305 - -
Lan17g0211 333 MobiDBLite consensus disorder prediction 313 333 - -
Lan17g0211 333 Gene3D - 239 316 IPR013088 GO:0006355|GO:0008270
Lan17g0211 333 ProSitePatterns GATA-type zinc finger domain. 249 274 IPR000679 GO:0006355|GO:0043565
Lan17g0211 333 ProSiteProfiles GATA-type zinc finger domain profile. 243 279 IPR000679 GO:0006355|GO:0043565
Lan17g0211 333 CDD ZnF_GATA 248 296 IPR000679 GO:0006355|GO:0043565
Lan17g0211 333 PANTHER GATA TRANSCRIPTION FACTOR 4 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0211 Lan-Chr17 1442764 1444361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0211 6 333 C2C2-Gata Transcription Factor Family AT5G66320 47.278 1.20e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan17g0211 GATA 4.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0211 - - aprc:113869559 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0211 17 1442764 1444361 Lan6g0192 6 1405338 1406755 LSH