Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0209 ATGGAACAACCACTCGTGACTCAAGGTGCTGCTATGGATTTTAAGGAGAAGTCGCAGTTTGTCGCACTCGCTCGTGATGCTGACGTGGCGGATAAAGAGGGTGGTGGTAGTAGTAGTAGTAGCGTTTTGAATAAGAAACGTGGTTCCAAAACGACGTCGCGTTCTAGGCCGAAGAAGAAGAAGGAAGAAGACGAAGATGTTTGTTTTATATGCTTTGACGGTGGAAGCCTTGTTCTTTGTGATCGAAGGGGTTGCCCTAAAGCATATCACCCTGCGTGTATTAAGCGAGATGAAGCGTTTTTTCGTTCAAAGGCTAAATGGAATTGCGGTTGGCATATATGCAGTGTTTGTCAGAAGGCATCCCATCATATGTGCTATACTTGTACATATTCTTTGTGCAAGGGATGTTCAAAAACTGCTGATTTTGTCAGTGTCAGGGGCAATAAAGGCTTTTGTGGAATATGCATGAAAACTATAATGCTGATCGAGAACAATGCCCTGGGAAATAATGCAAAGTGTGAAGTGGATTTCGATGACACAAGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGACATCTTTGAAAGGGAACCTATCTTTAACATTTGATGAGCTACTTCAAGCTACAAACTCATGGAGACATGCTTCTCTGAGTTGTAAAGTTGGAACTCCACGTGAACTTTATCTTTTTAAAGATGATAAAGGTTCTGGATCTGAGAAGTCCTGTATAGACATAGAATCTGATAATTTGAATAACAAGAAGCCAAAGAGAGGTGATGATCATATACATGTTGGGGATTGTGTCTTGAATGATGTTGGATGTCGTGCGCTGATCGGTGGTGTATGTACACACAAGAAACCGATCGACCCTAATGATGCATCAATTGGTGACACCACTAATATAGGAGTTGTGAGATCAGAAGCACCTGGTGTCACATTGGACATGTCATCATTGCTTCTCTCTAGAGGGATTGAGAAGCCACTTACTGATTGTGTGAATGATAAATTGTGGCATTATCAGGATCCAGCTGGGAAGGTTCAAGGACCTTTTTCTATGGTGCAGTTGTACAAGTGGAAAGCAAGTGGACATTTCCCTTCAGATCTCAGAATATGGAGGATAGATGAGAAACAAGATTACTCTATATTGTTAACTGATGCACTAGATGGGAAGTGTTCCAAAAGTGTGTTATTGCCACACAACAGCCAACTGCTGTCCTTAGGTCCCAATGTTACTTTTGATAATAAAGATAATACTCAGGGAAATGCAACAAGGAAGGAAATTGATGCAGACAGCCGAGATATCAAGCAGAGTGGGGAGCAAAAGGTGGATGATACCTGTACACAGTCTAATGGTAAAGACGAATCTGTTAGGAGCAATGGATGGAACTCTTATTCTTCTACACCAACAGAAGGGATTAACAATGAGGGGCAAAGTGGAAACTTCGAAAGGAGAGACGAGTCATCAAAATATGAAATATCTTGTCACAACCAGCCCCATGTATACCCTTCACTACCTTCTATTGCCTTTTTTGAGAATTTGAATGAGAACCCTTTGGATAAATTAAGGGAAGGCCATGGGATTGAGGCAAACCCTGAAGATAATGGAAACCATGACTTGAATAGGACTTCTGGAGGTCAGAGTAATAGTGGGCAGAGTTATCAGAAGCAGTCAGATGGTGAAGAGAATTCAGGGCAATCTTCTGGACAGAACTGGAAATGCCCTCAAGCAATTAATCCAGTGTGCAATGCTTCGACGTGGCTGACAATCTTTGGTGGACCTACTGATTGTGATGATTCAGTTTCAGATCTGTTGGCGGAAGTGGAGGCAATGGAGTCACGTGGTGGTGGCATAGAATCTTCCACTTCAATAATGAAAGGTGGTGAGGAATTAACTGACAGTTCTAAAACTGATTTTCTCAGTTTTGTAGATGGGTTTAGCACAGTATTTGATGCGCGTAAAGGTGATGCCCTGAGCTCCACGGATGATTTACACTTACCATTTCAACCTACAGCAGCAGCGGAACCATTTCGTCAAACTGAAGTATCATCAAAGAATATCTGGGGTGACTTCCTCAAAAAGTTCTGA 2085 0.4206 MEQPLVTQGAAMDFKEKSQFVALARDADVADKEGGGSSSSSVLNKKRGSKTTSRSRPKKKKEEDEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSVCQKASHHMCYTCTYSLCKGCSKTADFVSVRGNKGFCGICMKTIMLIENNALGNNAKCEVDFDDTSSWEYLFKVYWTSLKGNLSLTFDELLQATNSWRHASLSCKVGTPRELYLFKDDKGSGSEKSCIDIESDNLNNKKPKRGDDHIHVGDCVLNDVGCRALIGGVCTHKKPIDPNDASIGDTTNIGVVRSEAPGVTLDMSSLLLSRGIEKPLTDCVNDKLWHYQDPAGKVQGPFSMVQLYKWKASGHFPSDLRIWRIDEKQDYSILLTDALDGKCSKSVLLPHNSQLLSLGPNVTFDNKDNTQGNATRKEIDADSRDIKQSGEQKVDDTCTQSNGKDESVRSNGWNSYSSTPTEGINNEGQSGNFERRDESSKYEISCHNQPHVYPSLPSIAFFENLNENPLDKLREGHGIEANPEDNGNHDLNRTSGGQSNSGQSYQKQSDGEENSGQSSGQNWKCPQAINPVCNASTWLTIFGGPTDCDDSVSDLLAEVEAMESRGGGIESSTSIMKGGEELTDSSKTDFLSFVDGFSTVFDARKGDALSSTDDLHLPFQPTAAAEPFRQTEVSSKNIWGDFLKKF* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0209 694 PANTHER UNCHARACTERIZED 306 683 - -
Lan17g0209 694 PANTHER UNCHARACTERIZED 22 258 - -
Lan17g0209 694 SMART PHD_3 67 113 IPR001965 -
Lan17g0209 694 Gene3D - 336 393 IPR035445 -
Lan17g0209 694 MobiDBLite consensus disorder prediction 29 58 - -
Lan17g0209 694 CDD PHD5_NSD 67 112 - -
Lan17g0209 694 CDD GYF 334 387 IPR003169 GO:0005515
Lan17g0209 694 MobiDBLite consensus disorder prediction 521 571 - -
Lan17g0209 694 MobiDBLite consensus disorder prediction 536 571 - -
Lan17g0209 694 Pfam GYF domain 337 380 IPR003169 GO:0005515
Lan17g0209 694 SUPERFAMILY FYVE/PHD zinc finger 50 112 IPR011011 -
Lan17g0209 694 SMART gyf_5 335 390 IPR003169 GO:0005515
Lan17g0209 694 MobiDBLite consensus disorder prediction 451 478 - -
Lan17g0209 694 MobiDBLite consensus disorder prediction 407 489 - -
Lan17g0209 694 SUPERFAMILY GYF domain 332 387 IPR035445 -
Lan17g0209 694 MobiDBLite consensus disorder prediction 521 535 - -
Lan17g0209 694 ProSiteProfiles GYF domain profile. 334 388 IPR003169 GO:0005515
Lan17g0209 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 158 IPR013083 -
Lan17g0209 694 MobiDBLite consensus disorder prediction 419 450 - -
Lan17g0209 694 MobiDBLite consensus disorder prediction 34 48 - -
Lan17g0209 694 PANTHER BNAC08G48800D PROTEIN 22 258 - -
Lan17g0209 694 PANTHER BNAC08G48800D PROTEIN 306 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0209 Lan-Chr17 1418399 1422157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0209 64 138 PHD Transcription Factor Family AT4G14920 36.000 3.26e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0209 - - aip:107642933 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0209 17 1418399 1422157 Lan18g1063 18 15763316 15767390 LSH
Lan17g0209 17 1418399 1422157 Lan6g0194 6 1414076 1417905 LSH