Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0207 ATGCGAACACTTTGTGATGCTTGTGAGAGCGCAGCCGCTATTGTTTTCTGCGCTGCTGATGAGGCCGCACTCTGCCGTGCCTGTGATGAAAAGGTTCACATGTGTAATAAGCTAGCTAGCAGGCATGTAAGGGTTGGTCTTGCAAGTCCGAGCGCCGTGCCTCGCTGTGACATATGTGAGAATGCACCTGCTTTCTTCTTTTGCGAGACAGATGGAAGTTCCCTTTGTCTGCAGTGTGATATGTTAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTTTTCAGGCAAAGAGTTGAGTTTCCCGGAGATAAACCTAATCATGCAGAAAACCCACCTTTGCAACCTGTGGAACTTGGTGAGACTAAAAGAGGACAAAATTCACTTCCGAGACTAAAGATGGGAGAGAAGCAACAAAATCACAGGATGCCTATGATTCCATCGCCAGAACCTGGTGCTGATGGTCAGGCCAAGATGGAAACTGAAATGTTTGATTTGAACATGAATCCTAACAGAATACATGAACACACATCAAATAATCAGCCATAA 555 0.4505 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSAVPRCDICENAPAFFFCETDGSSLCLQCDMLVHVGGKRTHGRYLLFRQRVEFPGDKPNHAENPPLQPVELGETKRGQNSLPRLKMGEKQQNHRMPMIPSPEPGADGQAKMETEMFDLNMNPNRIHEHTSNNQP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0207 184 CDD Bbox1_BBX-like 4 47 - -
Lan17g0207 184 Gene3D Classic Zinc Finger 2 91 - -
Lan17g0207 184 Pfam B-box zinc finger 53 91 IPR000315 GO:0008270
Lan17g0207 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Lan17g0207 184 SUPERFAMILY B-box zinc-binding domain 49 86 - -
Lan17g0207 184 CDD Bbox1_BBX-like 56 96 - -
Lan17g0207 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lan17g0207 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lan17g0207 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lan17g0207 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lan17g0207 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Lan17g0207 184 MobiDBLite consensus disorder prediction 105 158 - -
Lan17g0207 184 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0207 Lan-Chr17 1387702 1389320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0207 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 62.295 2.73e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lan17g0207 zf-B_box 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0207 - - gmx:100780544 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0207 17 1387702 1389320 Lan6g0195 6 1421540 1426635 LSH