Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0201 ATGAACATGGAAGCTCAACAACCAAATGAGGATGGGGGCAGTGGAAAAGGTGGATTTATGAGCAGGCAAAGTAGTACAAGGTGGACTCCCACAACAGACCAGATAAGAATATTGAAAGACCTTTACTACAATAATGGAATAAGATCCCCAAGTGCTGAACAGATTCAGAGGATCTCTGCTAGGCTAAGACAGTACGGTAAGATTGAAGGCAAGAATGTCTTTTATTGGTTCCAAAACCACAAAGCAAGAGAAAGACAGAAGAAAAGGTTCACTTCTGATGTTCCCATGCAAAGAGCCCCAACCAACACTGCTTCTACTTGTAAACATGATGAACCACCCATTCACACTAAGTATTCTAACATACCCTCTACTGGGGGTTCTTCCACACCATCATCTTCTGCTATTGGAATGGTTTCTATGGGCCACATGGGAAACTATGGGTATGGATCTGTGCCCATGGAGAAGAGTTTTAGGGACTGTTCAATATCAGCTGGAGGTAGCAGTAGCCATGTTGGTAGTGCTATAAACCATAATTTGGGATACTTTGGTATGGACCAATATTCTTCAGCCTACACTTTCTTTGACAAAAGAAGGCAAAATGAAGAAACCATGGAAGAAGAACAAGTAGAGGATGGTTCCAATGAGATTCAAACACTCCCTTTATTCCCTGTGCACTGTGAAGACATTCATGGCTATTGTAACCTCAAGCCTAACTCTTCCAACTATGTTGGTGCTGGTTGGTATCAGGCTGAGGATGGTTTCATGAATGGTTCTCGAGCTTCCTTGGAACTCAGTCTCAACTCCTACGCTCGCAAATCACCAGATTTCTCTTAA 834 0.4269 MNMEAQQPNEDGGSGKGGFMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVPMQRAPTNTASTCKHDEPPIHTKYSNIPSTGGSSTPSSSAIGMVSMGHMGNYGYGSVPMEKSFRDCSISAGGSSSHVGSAINHNLGYFGMDQYSSAYTFFDKRRQNEETMEEEQVEDGSNEIQTLPLFPVHCEDIHGYCNLKPNSSNYVGAGWYQAEDGFMNGSRASLELSLNSYARKSPDFS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0201 277 MobiDBLite consensus disorder prediction 117 131 - -
Lan17g0201 277 MobiDBLite consensus disorder prediction 95 109 - -
Lan17g0201 277 Gene3D - 20 86 - -
Lan17g0201 277 SUPERFAMILY Homeodomain-like 18 92 IPR009057 -
Lan17g0201 277 MobiDBLite consensus disorder prediction 1 31 - -
Lan17g0201 277 ProSiteProfiles 'Homeobox' domain profile. 21 87 IPR001356 GO:0003677
Lan17g0201 277 PANTHER PROTEIN WUSCHEL 3 271 - -
Lan17g0201 277 MobiDBLite consensus disorder prediction 86 131 - -
Lan17g0201 277 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 271 IPR044555 GO:0003700|GO:0099402
Lan17g0201 277 CDD homeodomain 26 88 IPR001356 GO:0003677
Lan17g0201 277 Pfam Homeodomain 25 86 IPR001356 GO:0003677
Lan17g0201 277 SMART HOX_1 23 91 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0201 Lan-Chr17 1310929 1313097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0201 19 228 Wox Gene Family AT2G17950 42.800 1.03e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lan17g0201 Homeodomain 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0201 - - vra:106776674 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0201 17 1310929 1313097 Lan18g1071 18 15842028 15843097 LSH
Lan17g0201 17 1310929 1313097 Lan6g0216 6 1632450 1633956 LSH