Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0178 ATGGAGTTTTTGCCAAATACATTCCCTTTGCGTTCCTCTTTGTTTGGTTCCTTCGGGAATCTCTTTGAGAGGGTTAAACAAATGGGTACCCTTGCCGTTTCTGTCATCATTGGGAACATTTTATCTGCAATATTGACCTTCTGCTTTGCATTAGTGGGGACTTTGTTGGGAGCTATGACTGGTGCTTTGATAGGCCAAGAGACTGAGAGTGGCTTCATTAGAGGGGCTGCTGTTGGCGCTATATCGGGAGCCGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTTTGGCAATCTGATGAATCTGGAATTGGTTGTCTCTTATACTTGATTGATGTTATTGCTAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCTATGTTGAGTGCTGTTCAAAGCCAGATGGGTGCTGTTGAAACTGGCTTTGACGAGGTTCAAAACATTTTTGACATCGGTGGTTCAAAAGGTTTATCAGGAGATTCAGTTGAGAAAATCCCGAAAATCAAAATTACCAGTGACAACAATGTTGATGGTTCTGGTGAAAGAGTTTCTTGTTCCGTCTGCCTCCAGGACTTTCAGCTTGGAGAGACAGTTAGAAGCTTACCTCATTGTCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTTGGTCATGGTTCTTGTCCATTATGCAGAAGGGATCTTTAA 708 0.4294 MEFLPNTFPLRSSLFGSFGNLFERVKQMGTLAVSVIIGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDIGGSKGLSGDSVEKIPKIKITSDNNVDGSGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFGHGSCPLCRRDL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0178 235 CDD RING-H2_PA-TM-RING 190 232 - -
Lan17g0178 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 235 IPR013083 -
Lan17g0178 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Lan17g0178 235 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 17 235 - -
Lan17g0178 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 17 235 IPR044523 -
Lan17g0178 235 Pfam Ring finger domain 189 232 IPR001841 -
Lan17g0178 235 SMART ring_2 190 231 IPR001841 -
Lan17g0178 235 SUPERFAMILY RING/U-box 175 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0178 Lan-Chr17 1132187 1134280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0178 20 235 C3H Transcription Factor Family AT5G66070 76.852 7.05e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0178 - - lja:Lj2g3v1670720.1 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0178 17 1132187 1134280 Lan18g1087 18 15962604 15964535 LSH
Lan17g0178 17 1132187 1134280 Lan6g0220 6 1680038 1682071 LSH