Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0173 ATGTCGGATTCTCCATTACCACCAGCACCAAGAGGGAATTCAAGGTCCCCTTCTCCATGGAGAGCTCAGTCAAGGTCGAGGTCAAGGTCTAGATCTAGGCCTAGGTCTAGATCGAGATCTGTTCCAAGACAAAGGCCTAGGTCCCGTTCCAGAAGCCGTGGCAGATCAAGAGAAAGAAGTCCAGAAAGGACTGAGGTTCACAATCCTGGGAATACACTTTATGTGACCGGTCTATCTTCCAGGGTCACTGAGCGAGAGCTGGAGGAGCATTTCGCTAAGGAGGGAAAAGTTGCTTCCTGTTTTCTTGTGGTGGAGCCTCGTACGCGTATTTCACGTGGTTTTGCTTTTATTACAATGGATACTGTTGAGGGTGCAAACCGTTGTGTTAAGTATCTCAATCAGTCAGTTTTAGAAGGTCGCTATATCACTGTTGAGAAGTCAAGAAGAAAGCGGCCAAGAACTCCTACACCTGGACACTATCTTGGACTTAAAAATACTAGAGAATATGGGCATCGTGGTGACCATGGAGATCGTGGAGACCATGGAAGGTATCGAGGTGGATCTGGTCGTGATGATTATCCATACCGTAGGTCTCCAAGGCGTTCACCATATCGAGGGGGCAGGGATTATTCACCAAGGCACTCTCCCTATGCTGGAAGGTCTAGGAGGGAAAGATCCAGATCACCTTATTCTCCATATGCTAGCCCAGACAGGAGGTATGCTCGTGGATCTAGGTGA 738 0.4837 MSDSPLPPAPRGNSRSPSPWRAQSRSRSRSRSRPRSRSRSVPRQRPRSRSRSRGRSRERSPERTEVHNPGNTLYVTGLSSRVTERELEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEGANRCVKYLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGLKNTREYGHRGDHGDRGDHGRYRGGSGRDDYPYRRSPRRSPYRGGRDYSPRHSPYAGRSRRERSRSPYSPYASPDRRYARGSR* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0173 245 MobiDBLite consensus disorder prediction 1 73 - -
Lan17g0173 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Lan17g0173 245 MobiDBLite consensus disorder prediction 26 54 - -
Lan17g0173 245 Gene3D - 13 156 IPR012677 -
Lan17g0173 245 SMART rrm1_1 72 145 IPR000504 GO:0003723
Lan17g0173 245 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 11 241 - -
Lan17g0173 245 MobiDBLite consensus disorder prediction 146 245 - -
Lan17g0173 245 MobiDBLite consensus disorder prediction 165 208 - -
Lan17g0173 245 CDD RRM_RBMX_like 70 149 - -
Lan17g0173 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Lan17g0173 245 PANTHER RNA RECOGNITION MOTIF 11 241 - -
Lan17g0173 245 SUPERFAMILY RNA-binding domain, RBD 66 179 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0173 Lan-Chr17 1090987 1093994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0173 70 156 Eukaryotic Initiation Factors Gene Family AT1G49760 28.736 3.77e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0173 K12897 - gmx:100527350 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0173 17 1090987 1093994 Lan18g1090 18 15982116 15985118 LSH