Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0156 ATGGGAGGTGAAAGTCCCGTTGAGGGTAATGGAGGAGTCAACATCAACATTCGATGCTCCAATGGTACCAAATTTACCCTTCAGATTAATCTCGATTCCACCGTTGGATCATTCAAGGAGATCGTTGCTCGAAACTCTGATATCCCCGCTCAACAACAGCGTCTGATCTATAAGGGTCGCATCCTCAAGGATGATCAAACTCTCAAAACCTATGGTTTGGAGGCGGATCACACCATCCACTTGGTTCGTGGCTTTGCACCTGGCAATGCAGCTGGTGGGACCAATACTGGTACTGCCAACACTACGCCGAATAATACGAGTGGTGCTGGGGCTAATGTGGGTGGGGGTCTAGGCGGGCCAGGTGTTGGGGCATCACCTTTCCCTGGGCTTGGTATCAATGGATTGGGGGGCAGTGGCTTATTTGGAGAGGGCTTTCCCGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATATAGTGAGAGAAATAATGAACACTCCTGCTATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAACGATCCCAGCACTCTTCGTCAGACACTTGAAGCTACTAGGAACCCTGAGATCATGCGTGAAATGATGAGGAACACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTTAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTGAATGCCACTACAATGGGTGGTAATACAGCAAATGATAATGCATCGATCTTGGGGACTCAAGGTGGCCAAGTCAGGAACCAATCAACTAATCCCTCAACTACTAGTTCCGAAGCAACTTCCCCCGCACCAAATACTAACCCGCTTCCCAATCCTTGGTCTTCAACTGGAACTGGAGGTGCCCAAACCAACACCAGAGGGCCAACTACTGGCGGGGATGCTCGACAGCAGACACCTACAGGCCTAGGAGGGCTTGGTCTGCCGGATCTTGAAGGCATGTTGGGCAGTATGCCAGATGCTGCTATGATGACCCAGTTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATGCTTTCCAATCCACAGACTATGAATCAGGTTCTTGGTGCCAATGCTGGGCAGCGTGGCATGCCTGATATGAATGCTCTTAGAGAAGTCATGCAGAACCCAGAGTTTCTTCGCCTGTTTTCCTCACCTGAGACACTGCAGCAACTTATGTCTTTCCAACAATCCTTTATGTCTCAGCTTGGTCAGCAACAATCAACCCGGGAACCTGGTCAAACTGGTGCTGGTACTGGTATAGGACCATTTAACAACATGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAACCGGTAGCTTATCTGTTCCGAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCACAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATAAGAGCTCTTATTGCTACCTCAGGGAATGTTCATGCAGCTGTTGAGCGGCTTTTGGGGAATTCTGGTGGACAGTAG 1608 0.4745 MGGESPVEGNGGVNINIRCSNGTKFTLQINLDSTVGSFKEIVARNSDIPAQQQRLIYKGRILKDDQTLKTYGLEADHTIHLVRGFAPGNAAGGTNTGTANTTPNNTSGAGANVGGGLGGPGVGASPFPGLGINGLGGSGLFGEGFPDLEQMQQPFLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMGGNTANDNASILGTQGGQVRNQSTNPSTTSSEATSPAPNTNPLPNPWSSTGTGGAQTNTRGPTTGGDARQQTPTGLGGLGLPDLEGMLGSMPDAAMMTQLMQNPAISQMMQSMLSNPQTMNQVLGANAGQRGMPDMNALREVMQNPEFLRLFSSPETLQQLMSFQQSFMSQLGQQQSTREPGQTGAGTGIGPFNNMGLEMLSSMFGGLGTGSLSVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGGQ* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0156 535 Gene3D - 474 535 - -
Lan17g0156 535 ProSiteProfiles Ubiquitin domain profile. 13 82 IPR000626 GO:0005515
Lan17g0156 535 PANTHER UBIQUILIN 8 533 - -
Lan17g0156 535 SUPERFAMILY Ubiquitin-like 4 98 IPR029071 -
Lan17g0156 535 MobiDBLite consensus disorder prediction 92 111 - -
Lan17g0156 535 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 486 531 IPR015940 -
Lan17g0156 535 SUPERFAMILY UBA-like 488 530 IPR009060 GO:0005515
Lan17g0156 535 MobiDBLite consensus disorder prediction 263 336 - -
Lan17g0156 535 SMART uba_6 492 530 IPR015940 -
Lan17g0156 535 SMART ubq_7 13 84 IPR000626 GO:0005515
Lan17g0156 535 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 8 533 - -
Lan17g0156 535 SMART CBM 188 227 IPR006636 -
Lan17g0156 535 SMART CBM 138 175 IPR006636 -
Lan17g0156 535 SMART CBM 391 426 IPR006636 -
Lan17g0156 535 SMART CBM 346 388 IPR006636 -
Lan17g0156 535 CDD UBA_PLICs 492 530 - -
Lan17g0156 535 Gene3D - 10 93 - -
Lan17g0156 535 Gene3D - 183 241 - -
Lan17g0156 535 Pfam Ubiquitin family 15 82 IPR000626 GO:0005515
Lan17g0156 535 MobiDBLite consensus disorder prediction 92 112 - -
Lan17g0156 535 MobiDBLite consensus disorder prediction 263 347 - -
Lan17g0156 535 Pfam UBA/TS-N domain 492 528 IPR015940 -
Lan17g0156 535 PRINTS Ubiquitin signature 23 43 IPR019956 -
Lan17g0156 535 PRINTS Ubiquitin signature 44 64 IPR019956 -
Lan17g0156 535 PRINTS Ubiquitin signature 65 86 IPR019956 -
Lan17g0156 535 CDD Ubl_Dsk2p_like 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0156 Lan-Chr17 977880 982958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0156 13 82 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 3.31e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0156 K04523 - gmx:100776447 792.727