Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0154 ATGGGAGGTGAAAGTCCCGTTGAGGGTAATGGAGGAGTCAACATCAACATTCGATGCTCCAATGGTACCAAATTTACCCTTCAGATTAATCTCGATTCCACCGTTGGATCATTCAAGGAGATCGTTGCTCGAAACTCTGATATCCCCGCTCAACAACAGCGTCTGATCTATAAGGGTCGCATCCTCAAGGATGATCAAACTCTCAAAACCTATGGTTTGGAGGCGGATCACACCATCCACTTGGTTCGTGGCTTTGCACCTGGCAATGCAGCTGGTGGGACCAATACTGGTACTTCCAACACTACGCCGAATAATACGAGTGGCGCTGGTGCTAATGTGGGTGGGGGTCTAGGCGGGCCAGGTGTTGGGGCATCACCTTTCCCTGGGCTTGGTATCAATGGATTGGGGGGCAGTGGCTTATTTGGAGAGGGCTTTCCCGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATATAGTGAGAGAAATAATGAACACTCCTGCTATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAACGATCCCAGCACTCTTCGTCAGACACTTGAAGCTACTAGGAACCCTGAGATCATGCGTGAAATGATGAGGAACACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTTAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTGAATGCCACTACAATGGGCGGTAATACAGCAAATGATAATGCCTCTATCTTGGGGACTCAAGGTGGCCAAGTCAGGAACCAATCAACTAATCCCTCAACTACTAGTTCCGAAGCAACTTCCCCCGCACCAAATACTAACCCGCTTCCCAATCCTTGGTCCTCAACTGGAACTGGAGGTGCCCAAACCAACACCAGAGGGCCAACTACTGGCGGGGATGCTCGACAGCAGACACCTACAGGCCTAGGAGGGCTTGGTCTGCCGGATCTTGAAGGCATGTTGGGCAGTATGCCAGATGCTGCTATGATGACCCAGTTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATGCTTTCCAATCCACAGACTATGAATCAGGTTCTTGGTGCCAATGCTGGGCAGCGTGGCATGCCTGATATGAATGCTCTTAGAGAAGTCATGCAGAACCCAGAGTTTCTTCGCCTGTTTTCCTCACCTGAGACACTGCAGCAACTTATGTCTTTCCAACAATCCTTTATGTCTCAGCTTGGTCAGCAACAATCAACCCGGGAACCTGGTCAAACTGGTGCTGGACCATTTAACAACATGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAACCGGTAGCTTATCTGTTCCGAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCACAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATAAGAGCTCTTATTGCTACCTCAGGGAATGTTCATGCAGCTGTTGAGCGGCTTTTGGGGAATTCTGGTGGACAGTAG 1596 0.4756 MGGESPVEGNGGVNINIRCSNGTKFTLQINLDSTVGSFKEIVARNSDIPAQQQRLIYKGRILKDDQTLKTYGLEADHTIHLVRGFAPGNAAGGTNTGTSNTTPNNTSGAGANVGGGLGGPGVGASPFPGLGINGLGGSGLFGEGFPDLEQMQQPFLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMGGNTANDNASILGTQGGQVRNQSTNPSTTSSEATSPAPNTNPLPNPWSSTGTGGAQTNTRGPTTGGDARQQTPTGLGGLGLPDLEGMLGSMPDAAMMTQLMQNPAISQMMQSMLSNPQTMNQVLGANAGQRGMPDMNALREVMQNPEFLRLFSSPETLQQLMSFQQSFMSQLGQQQSTREPGQTGAGPFNNMGLEMLSSMFGGLGTGSLSVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGGQ* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0154 531 Gene3D - 183 241 - -
Lan17g0154 531 SUPERFAMILY UBA-like 484 526 IPR009060 GO:0005515
Lan17g0154 531 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 482 527 IPR015940 -
Lan17g0154 531 MobiDBLite consensus disorder prediction 91 111 - -
Lan17g0154 531 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 8 529 - -
Lan17g0154 531 ProSiteProfiles Ubiquitin domain profile. 13 82 IPR000626 GO:0005515
Lan17g0154 531 Gene3D - 470 531 - -
Lan17g0154 531 PRINTS Ubiquitin signature 23 43 IPR019956 -
Lan17g0154 531 PRINTS Ubiquitin signature 44 64 IPR019956 -
Lan17g0154 531 PRINTS Ubiquitin signature 65 86 IPR019956 -
Lan17g0154 531 MobiDBLite consensus disorder prediction 263 336 - -
Lan17g0154 531 Pfam Ubiquitin family 15 82 IPR000626 GO:0005515
Lan17g0154 531 SMART ubq_7 13 84 IPR000626 GO:0005515
Lan17g0154 531 PANTHER UBIQUILIN 8 529 - -
Lan17g0154 531 SMART uba_6 488 526 IPR015940 -
Lan17g0154 531 SMART CBM 188 227 IPR006636 -
Lan17g0154 531 SMART CBM 138 175 IPR006636 -
Lan17g0154 531 SMART CBM 391 426 IPR006636 -
Lan17g0154 531 SMART CBM 346 388 IPR006636 -
Lan17g0154 531 CDD UBA_PLICs 488 526 - -
Lan17g0154 531 MobiDBLite consensus disorder prediction 90 111 - -
Lan17g0154 531 SUPERFAMILY Ubiquitin-like 4 98 IPR029071 -
Lan17g0154 531 MobiDBLite consensus disorder prediction 263 347 - -
Lan17g0154 531 CDD Ubl_Dsk2p_like 13 85 - -
Lan17g0154 531 Pfam UBA/TS-N domain 488 524 IPR015940 -
Lan17g0154 531 Gene3D - 10 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0154 Lan-Chr17 962778 967743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0154 13 82 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 3.52e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0154 K04523 - gmx:100776447 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0154 17 962778 967743 Lan18g0086 18 634544 639458 LSH
Lan17g0154 17 962778 967743 Lan6g0245 6 1834431 1840640 LSH
Lan17g0154 17 962778 967743 Lan18g0086 18 634544 639458 PCT
Lan18g0086 18 634544 639458 Lan17g0154 17 962778 967743 PCT