Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0152 ATGGGTCTTTGCTTTGGTTCACTCTATGCTCCCTCTACCCGTTCATTGAGCTATGAGAGTGTGAGTGGACAGATTCTGGAAACAGGAGACATGAGAGTGTTTAGTTTTGTGGAATTGAAAGCAGCCACAAAGAATTTCAGGTCAGATGCATTGCTTGGTGAAGGTGGTTTTGGTAAAGTTTATAAAGGTTGGTTGCATCACAACACACTCACACCTGCTAAACCAGGCTCTGGGTTCATTGTTGCCATCAAAAAAATGAACACAGAAAGTGACCAAGGCTTTCAAGAGTGGAAGTCAGAAGTGAACTTTCTAGGAAGTATTTCACACCCAAATCTGGTGAAGCTATTGGGTTACTGTATGGAGGATGAGGAACTTCTCCTTGTGTATGAGTTCATGCAAAAGGGAAGTTTGGAGAGTCATCTATTCAGAAGACATGCTAGCACAGAACCACTTTGTTGGAACACACGACTCAAAATAGCTATTGATGCAGCTCGTGGCTTGGCTTTCTTGCACACTTCAGAAAAGCAAGTTATATACAGAGATTTCAAGGCCTCAAATATACTACTTGATGGGAATTACAATGCAAAAATTTCAGATTTTGGGATAGTTAAATTGGGGCCTTCTGGGGGAGATTCACATGTGACTACAAGAGTCATTGGCACAATTGGTTATGTTGCTCCAGAATACATGGCTACAGGTCACTTGTATGTAAAGAGTGATGTTTATGGATTTGGTGTAGTGCTGCTTGAAATTATGACAGGGTTGAGGGCAATTGATACAATGAGGCCCAAAACGCAACAGAACCTAGTTGAATGGATTAGGCCATTTTTGTATGAGAAAAGAGATATTAAAAGCATTATGGATGCAAAGTTAGAAGGCCAATATTCAATAAAAGCAGCAATACAAGTAGCACAGCTTACTCTAAAATGCATAGAAAATGACCCTAAAAACCGTCCTTCTATGCAAGATGTACTTCACACATTGGAATGTGTTGAAGCTATAAATGTTGAAACAAAAAAATCCAAGAAACTTCGTCCTAGGTCTGAAGCTTTTCAACATATACAACAACCCCTTTATCATCATTCTGCACCTATGTAA 1098 0.3971 MGLCFGSLYAPSTRSLSYESVSGQILETGDMRVFSFVELKAATKNFRSDALLGEGGFGKVYKGWLHHNTLTPAKPGSGFIVAIKKMNTESDQGFQEWKSEVNFLGSISHPNLVKLLGYCMEDEELLLVYEFMQKGSLESHLFRRHASTEPLCWNTRLKIAIDAARGLAFLHTSEKQVIYRDFKASNILLDGNYNAKISDFGIVKLGPSGGDSHVTTRVIGTIGYVAPEYMATGHLYVKSDVYGFGVVLLEIMTGLRAIDTMRPKTQQNLVEWIRPFLYEKRDIKSIMDAKLEGQYSIKAAIQVAQLTLKCIENDPKNRPSMQDVLHTLECVEAINVETKKSKKLRPRSEAFQHIQQPLYHHSAPM* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0152 365 ProSiteProfiles Protein kinase domain profile. 46 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0152 365 Pfam Protein tyrosine and serine/threonine kinase 50 328 IPR001245 GO:0004672|GO:0006468
Lan17g0152 365 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 13 342 - -
Lan17g0152 365 PANTHER OS01G0588500 PROTEIN-RELATED 13 342 - -
Lan17g0152 365 SUPERFAMILY Protein kinase-like (PK-like) 23 332 IPR011009 -
Lan17g0152 365 Gene3D Phosphorylase Kinase; domain 1 30 131 - -
Lan17g0152 365 ProSitePatterns Protein kinases ATP-binding region signature. 52 85 IPR017441 GO:0005524
Lan17g0152 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Lan17g0152 365 CDD STKc_IRAK 52 329 - -
Lan17g0152 365 Gene3D Transferase(Phosphotransferase) domain 1 132 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0152 Lan-Chr17 942275 945675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0152 32 328 Glycoside Hydrolase AT3G07070 49.664 3.04e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan17g0152 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0152 - - cit:102629050 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0152 17 942275 945675 Lan18g0084 18 617161 622409 LSH