Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0144 ATGGAGCAAACTGGAGAATCTGATTTGCAGAGATTCCTTCCGACGCCGTTTTTGACCAAAACGTATCAGCTTGTTGATGATCCTTCGAAGAATGACCTAATTTCATGGAATGAAGATGGAACAACGTTCATAGTTTGGAAACCCGCTGAATTCGCTCGAGATTTGCTTCCTAATTATTTCAAACACAACAACTTCTCTAGTTTCGTTCGACAGCTTAATACATATGGATTTCGGAAGGTTGTACCTGACCGTTGGGAATTCGCTCATGATTGTTTCCGTCGCGGCGAGAGAGGTTTGCTGAGAGAAATTAAGCGCCGGAAAATATCGCCGGCGGCAGCAATCGCAGCGAACACGGTGACTGTTGCAGTGGCGGCGCCTGCACTGGCGAGAACGGTGTCGCCAACAACTTCCGGCGAAGAACAGGTACTCTCCGCAAACTCATGTCCGAATATTACAGTGCACCAGAGCACGACGAATTGCACTAATATACCAGAACTATTAGAAGAGAACGAGAGGCTTAGGAAAGAGAACGTGCAAATGAGTCACGAGTTGATTCAATTGAAGAGTTTGTATAATAATATATTCGGTTTGATGTCAAATTATGCTTCTTCTCGTTCCACTCAATTTCACTCATCTATTAGCGCTGCTGTACCTGAAGGGAAATCATTGGATCTTATGCCTCCAACAAAGTACGCGACGCCGTTTAAGGCCGGAGATGGAGAGGTTCCGAAATTGTTTGGGGTTTCAATTGGGATGAAGAGAGGACATAGGACAGAAAGTGAGGGTGAAACAGAGAAAGAATATCAAACACAGTTGTCACATGAAGCAGATGGCGGTTCAGATGTGAAATCTGAACCGCACGATGGGGACAATTCTGGTGATCAGGTTAAGGAAACTCGTTGGTTGGAGCTTGGGAAATAA 921 0.4506 MEQTGESDLQRFLPTPFLTKTYQLVDDPSKNDLISWNEDGTTFIVWKPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDRWEFAHDCFRRGERGLLREIKRRKISPAAAIAANTVTVAVAAPALARTVSPTTSGEEQVLSANSCPNITVHQSTTNCTNIPELLEENERLRKENVQMSHELIQLKSLYNNIFGLMSNYASSRSTQFHSSISAAVPEGKSLDLMPPTKYATPFKAGDGEVPKLFGVSIGMKRGHRTESEGETEKEYQTQLSHEADGGSDVKSEPHDGDNSGDQVKETRWLELGK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0144 306 Coils Coil 163 190 - -
Lan17g0144 306 MobiDBLite consensus disorder prediction 253 306 - -
Lan17g0144 306 Gene3D - 11 107 IPR036388 -
Lan17g0144 306 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan17g0144 306 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan17g0144 306 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan17g0144 306 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan17g0144 306 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
Lan17g0144 306 MobiDBLite consensus disorder prediction 254 306 - -
Lan17g0144 306 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 297 IPR027725 -
Lan17g0144 306 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 6 297 - -
Lan17g0144 306 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan17g0144 306 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0144 Lan-Chr17 880318 882052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0144 8 306 HSF AT4G11660 51.198 1.20e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan17g0144 HSF_DNA-bind 3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0144 K09419 - gmx:100791020 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0144 17 880318 882052 Lan6g0123 6 860568 863840 LSH