Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0143 ATGTTCCAAGTTACAAACGAGGTCGAAAATTTCCATTGCAATTCTGAACCCTCTCCTTTCAATTCAACCCATATTTCAGGGAGAACGAATGCTCAAGTTAGACGCAACTCTAAGGGATGCTGGACAGAGGAAGAGGACAACATTTTGATTGAAACAGTGAAGAAGCACGATGGTAGGAACTGGAAGAAAATAGGTGGATATGGCAGTACCAGTCTTGCTGCAAACCTACCTGGGCGAACTGGTATCCAATGTTTGCATCACTGGCAAAAGGTTTTAAATCCTGATGTTGTAAAGGGTTCATGGACAAAGGAGGAGGATGATTGCCTCATTGACCTTGTCGGAAATTATGGTCTGAAGAAATGGTCTTATATTGCACAATTTTTACCAGGTCGTATTGGGAAGCAATGCCGAGAGAGGTGGCACAATCACTTAGATCCAACTATTAGGAAGGAAGCATGGACGGAGGAAGAGGAAGCAGTACTTGCCTACTATTACCAATTATATGGCAGTAAATGGGCAGAAATTGCAAAGGTTCTTCCCGGAAGGAGTGACAACGCTATAAAAAATCATTGGAACTCAATGAAGAAGAAATTGGATGCATCCTCACCTTCTGGAAGTGACATAAGCTTTGCCACTTCTGGAGTAAAGCCAGCACATGTTTTGGCTAAAAAAGAACTTCAAAGTTTCAATGAAATGGTTTCTCTTGAACAGAGTCACTTGTTGAAAGACAGTGTTAACAACTCTCATACACAATTGATTCTTCAAAATACTTCAGCAGGGGAATTTTGCTCTGAGAAAAGCTGTCTTGAGGGGGGAACTCCAAGTGCCTCAATTAAATATATGGCTTTATGTAATACTCCTGATATGTATGCCACAAATTTAGATTATTTCCCTCTTGCAACTGATGTTGCTTCTGAGGACATTGAATCTCCGAAACGGCAAAAAGTTTCTTCTTCAGAGACAAAGTTTCTTGCCGATGGTGAATATTACAATCAAATTAGAAAGGGAAGCAACAACAAAATTAACAGTATGCAACATTATGCTGATGACATAAGCGGCTTCAGCCCAGTATCTGTACTAAGAAGCTTAGCAATGACATACGAAAATATGCCTTCGATCATAAGGAAAAGAAGTCCCAGGAAGACAAGCAGTGCAGACTACTGTGACAGTACCCAAACACCTTTGTCAATGATCGTTTCCACTCCTGAATCTGAACGTGTTTTCAATTATTAG 1233 0.4047 MFQVTNEVENFHCNSEPSPFNSTHISGRTNAQVRRNSKGCWTEEEDNILIETVKKHDGRNWKKIGGYGSTSLAANLPGRTGIQCLHHWQKVLNPDVVKGSWTKEEDDCLIDLVGNYGLKKWSYIAQFLPGRIGKQCRERWHNHLDPTIRKEAWTEEEEAVLAYYYQLYGSKWAEIAKVLPGRSDNAIKNHWNSMKKKLDASSPSGSDISFATSGVKPAHVLAKKELQSFNEMVSLEQSHLLKDSVNNSHTQLILQNTSAGEFCSEKSCLEGGTPSASIKYMALCNTPDMYATNLDYFPLATDVASEDIESPKRQKVSSSETKFLADGEYYNQIRKGSNNKINSMQHYADDISGFSPVSVLRSLAMTYENMPSIIRKRSPRKTSSADYCDSTQTPLSMIVSTPESERVFNY* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0143 410 PANTHER MYB PROTEIN-RELATED 26 242 - -
Lan17g0143 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 199 IPR017930 -
Lan17g0143 410 PANTHER TRANSCRIPTION REPRESSOR MYB5 26 242 - -
Lan17g0143 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 92 IPR017930 -
Lan17g0143 410 SUPERFAMILY Homeodomain-like 40 102 IPR009057 -
Lan17g0143 410 Gene3D - 151 211 - -
Lan17g0143 410 CDD SANT 41 92 IPR001005 -
Lan17g0143 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 148 IPR017930 -
Lan17g0143 410 Gene3D - 37 97 - -
Lan17g0143 410 ProSiteProfiles Myb-like domain profile. 93 144 IPR001005 -
Lan17g0143 410 CDD SANT 100 144 IPR001005 -
Lan17g0143 410 Pfam Myb-like DNA-binding domain 38 92 IPR001005 -
Lan17g0143 410 SMART sant 97 146 IPR001005 -
Lan17g0143 410 SMART sant 149 197 IPR001005 -
Lan17g0143 410 SMART sant 37 94 IPR001005 -
Lan17g0143 410 ProSiteProfiles Myb-like domain profile. 145 195 IPR001005 -
Lan17g0143 410 SUPERFAMILY Homeodomain-like 95 191 IPR009057 -
Lan17g0143 410 CDD SANT 152 195 IPR001005 -
Lan17g0143 410 ProSiteProfiles Myb-like domain profile. 33 92 IPR001005 -
Lan17g0143 410 Pfam Myb-like DNA-binding domain 101 158 - -
Lan17g0143 410 Gene3D - 98 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0143 Lan-Chr17 876172 879247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0143 25 377 MYB Transcription Factor Family AT5G02320 39.898 1.00e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan17g0143 Myb_DNA-bind_6 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0143 - - lang:109331673 845.884