Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0134 ATGGTTATTGCTAATAATAAGGCTAGAACTAGGGCTGTAGAGAAAAATGGTGTATTAGGTCAAAATCTCACTGTTACATCATGTAGTTCCTCAACTATACCATTAGCTCCTGTTTATTACCCTACTGATGATGAGTTTAAGGATCCTTTGGAGTTTATTTACAAGATTAGACCTGAGGCTGAGAAATTTGGGATTTGTAAGATTGTTCCACCCAATAATTGGAAACCCCCTTTTGCTTTGGATCTTAATACTTTCACTTTCCCTACAAAAACACAAGCCATTCATAAGCTCCAGGCGAGGACTGCCGCGTCTGATTCAAAGACTTTTGACTTGGAGTACTCTAGGTTTTTGGAGGGTCACTGTGGGAAGAAGTCCAGGAAGAGGGTTGTTTTCGAGGGGGAGGATTTGGATTTGTGTAAGTTGTTTAATGCGGTTAAGCGGTTTGGCGGGTATGATAAGGTTGTCGATGAAAAGAAATGGGGGGATGTTGCTCGGTTTGTTAGGCCGTCTGGGAAGGTTTCGGAATGTGCTAAGCATGTGTTATGTCAATTATACCGAGAGCATTTGTATGATTATGAGAATTTCAATAATAAGATGAATCAAGGGACAGTTCGGAGTTGTAAGAAAGGGGTCCAAGAGGATCTAAAGACTGATCATGGGGTAGGGTCTTTGGGTTCTGCGCCTAAGATGCATCAACGTAGTAATGATTGTTTGAAAGGTAAGATTTGCAAATTGAAGGAAGAGGAACATGATCAGATTTGTGAGCAATGCAAAAGTGGTTTGCACGGGGAAGTCATGCTTTTGTGTGATAGGTGTGATAAGGGCTGGCATATTTATTGTCTTTCTCCGCCATTGAAGCAAATTCCTGTGGGAAACTGGTATTGTTTCAACTGCTTGAGTTCTGATAGGGAGAGCTTTGGTTTTGTGCCTGGTAAACATTATTCATTGGATGCCTTTAGACGCATAGCGGACCGGTCAAGGAAGAGATGGTTTGGATCAGGACCTGTTTCGAGGGTGCAGATAGAGAAAAAGTTTTGGGAGATTGTGGAAGGATTGGTAGGTGAGGTTGAGGTTATGTACGGAAATGACTTGGATACATCTGTCTATGGGAGTGGTTTCCCACGTGCAACTGATCAGAAGTCAGAATCTATTGACGAGAAGTTATGGCAAGAGTACTCAAATAACCCATGGAATCTAAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATAACCGGTGTTATGGTACCCTGGTTATATATTGGGATGCTATTCTCATCCTTTTGTTGGCATTTTGAGGATCACTGCTTTTACTCCATGAATTATTTGCACTGGGGAGAGCCAAAGTGCTGGTACAGCGTTCCTGGTAGTGAGGCAAGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCGGATCTGCTTTTTCAACTTGTAACCATGTTAAACCCATCTGTCCTGCAAGAAAATAAAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGGAACTTTGTTATTACCTTCCCCAAATCCTACCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCTGCCGACTGGTTACCATATGGTGCATTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGCGATGTTGATAGCAGAGGCTATTCTTATTTAAAGAAGGAATTGTTGAGAATATTGGATAAAGAAAAATCTTGGAGAGAGAAACTCTGGAAAAGTGGTATTACTAAATCTTCTCGCATGGCTCCTCGATCATGTCCCCAGTATGTTGGAACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTTTCTGCTGTTGTGTGCAAATGCAGGCCATCATCTTTTGTTTGTCTGGAGCATTGGGAACACCTTTGTGAGTGTAAAAATGTTAAACGACGCCTTCTCTACCGTCATTCACTCGCAGAATTGTATGACTTGACATTTTTTATGGACAAATATACTTCTGAGGACAAAGCTGAGTATAGAAGTGTGAGAAGGCAATCTTCATGTCTGGGTCCTTTGACCAAAAAGGTAAAAGGTAGCTCAATTACTTTCACTCAACTTGCTACAGAGTGGATTCTGCGATCCAGTACGATTCTTCAGAGTCCCTTTTCAAGTGATGCATTTGCTACGGCAATAAGGAAAGCCGAACAATTTGTTTGGGCTGGTTCTGAGATGGATTCTGTTCGCGATATGGTGAAGATTTTGATTGAAGCTCAGAAGTGGGCGGAAGGTATAAGAGATTGTGTAACAAAAATTGAGTTTTGGTTGTCTCATCAAGACTCCGGTGTAAAGAAAGTTCATTTAGAATTTGTTGATGAGTTACTGAGGTTTAATCCTTCACCGTGCAATGAGCCTTGTCATCATAATTTGAAGGAATACGCAGAAGAAGCAAGGTCATTAGCCCAGGCGATTGATACTGCTTTGTCAATCTGTTCAAAGATGTCTGAGTTAGAACTTTTGTACTCCAGAGCTTGTGGCTTACCCATCTATGTGAAAGAGATAAAGAAGTTAAAAGGGAAAATTTCTTCAACTAAGGCATGGCTGCATAGTGTTAGAAAGTGCATTTCAGCGAGACATCCTGTTGAATTAGAGGTTGATGTTCTTTACAAGTTAAAATCAGAGATTGTGGATCTTCAAGTTCAACTCCCAGAGATAGATGTGCTACATAATCTATTAAGTCAAGCTGAATCTTGTAGTACTCAATGTCGTGAGATGCTAGAAGGTTCAATGAATATTAAGAATGTTGGTCTGCTGCTTAAGGAATGGGACAAGTTTACAGTTGGTGTTCCGGAGTTGAAACTTTTAAGGCAATACCATACAGAAGCTGTTTCATGGGTTTCCCACTTCAATGACGTTTTAAGGAGAGTTCACATGCAGGAAGATCAACATAATGCAGTTGATGAATTGGAATACATTTTTTATGAAGGTTTATCTTTAAAAATTCAAGTTGAAGAATTGCCATTAGTTGAGATTGAGCTAAAGAAGGCTAACTGCCGGGAAAAGGCTTTGAAGGCATGTGATTCTAAGATGTCTTTGGAATTCATTCAGCAACTGTTGAATGAAGCCACAATTCTACAAATTGAGGGAGAGAAACAATTCGTCAAATTATCTTGCGTGCTTGCTGTTGCCTTTCCTTGGGAGGACAGGGCTAGACAGATTCTTTCACACGAGGCACCTATTTCTGACTTTGAGGACATGATGAGGGCTTCAGAAAACATATTTGCTATTCTTCCCTCACTCGAAAAAGTAAAGGACGTGTTATCAGAAGCTAACTCCTGGTTAAGGAATACAAAGCCTTATTTAGTCTCTTCTACTTGTGCTTCAAATTCTTCACGGAAAGTTGAGGACTTGCAGATGTTGGTTTCTCAATCAAAGCTTCTTAAGATATCTTTGGAAGAAAGCAGGATGCTTGAATTAGTTTTGAAGAATTGCAAAGCATGGGAGTATAAAGCTTGTTCTCTACTAGAAGATGCTCAATGCCTCTTTGAATTGGATAACATTGTTCACGGAATAAGCAGTGGTTTAATGTCTAAAGTCGAAGATTTAATTGCGGGAATCCAATCTGCCATAACATCTAGCATATTACTTGGTTTTGACTTCAATGAGATTGCAAAACTTCAAGCATGTTGTTCTACACTGCAGTGGTGCAGAAGAGCTCTTTCTTTCTGCAACCATTCTCCTTCATTGGAGGAAGTTTTGGAGGTTGCAGAAGGTCTATCTCATTCCCGTGTTTCTGGTGCTCTGTTGAAAGTACTGGTTGACGGGGTTGAATGGCTTAGGAGAGCGTTAGAGGGGATTTATGGACCTCAAAATTCTAGAAAATGCAAGTTGACTGATGTTGAAGATATTCTTACTGATTATAAGACTATTAATATGACCTTTGCAGCAGTAAATTGTCAACTTGAAGAAGCCATTAGAAAACATAAGTTGTGGCAAGAACAGGTGCATCAAGTTTTTGGTCTAAGCCCAAGGGAACGATCTTGGTCATCATTGTTGGAGCTCAAGGAACATGGAGATACCATTGCCTTTAGTTGCTCAGAACTAGATTTGATTTTATCTGAGGTTGAGAAGGTGGAAAATTGGAAGAAAAACTGCATGGATAGCATAGGAACTTCAGTCCACAATGAGAATTCACTGCTTGATGGGCTGCAGAAGATAGAACAGACTCTGGATAGATCATTGTTCATACATGGCACATTGCAAGGTCAGAAGGCACAAAACCTATGCATCTGCTGCTTCATTGACTCCAAAGATCAGGAATTTCTTACTTGTTCCATTTGTATGTACTGCTATCATTGTCGGTGTATTGGACTAACAGCAAGGGACATAGGTTTAGCAAACTACAAGTGCCCTTATTGTGAAATTTTGATGGGTGAATTCCGTTGCAAGAATGGAGACGGCCTCCTGAGGTTCGGGAAGAAACATGTTGAATTGAAAGTTCTTACTGAACTTCTGTCTGAAGCTGAACATTTCTGTTTATGGATTGATGAAAGAGATGTTTTGAACCAACTTGTTGAGAAAGCCCTTGCATGCAAATGTTGCCTCAGAGAAATAGTGAACCTTGCATTAGCTAATGTCGAAGAAGATATTAGCACCATCTCTGAAAAATTGACCATTGCAATAAAGGCATGCGAAGTTGCTGGTGTCTGTGATAAGCATGATAATAGTGACCTTGAGCTGGCTTTAGCAAAAAACTTGTGGAAAATTCAAGCCAAAAGATTGCTAAATGATGTTCGAAAGCCCACAATCCAACAAATTCAGAAGCATCTGAAAGAGGGACTGGCTATGGAAATATCACCTGAAGATCACTACATGCTGAAACTTACAAATGTTAATCACGTCAGTCTGCAGTGGGCAGAACTAGCCAAAAAGGTAGCAAATGATTCTGGGGAACTCGCCCTGCATAAAGTTTTTGAACTTGTAGAGGAAGGTGAAAATTTGCTTGTAGATGTAGATGAGGAACTCAGGATAGTAAGAGCTCGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCAATTAGGATGATTGCATGTGTTCACTGTAGTGAGTGGTATCACTTTGATTGCATGAAATTACCAAGCACAAGAGATGTCTACATTTGTCCTGCATGTAACCCGTGTCCCGAAGTATTGCCTACAAACCATGAGAGATTAAGTAATGGTAAATTTGAGGAGCCCAAAACCCCATCTCCAAGGCATACAAACCCAAGAAAGAAAAGGAGTTACAAGATGTATGAGAGAGGGGATGAAGATAGAGATAATAGTAATTATAGGTATTCAAGTGGGATACAATTTCTAAGGTGGCAAAATCGAAAGCCTTTTAGAAGAGCAACTAAGAAACGTGTTGAGCTTATGAGTCTTTCTCCATTTCTATGCACACAACAACAACAACTATGCATAGTAGATAGAGATAGTCATTGA 5550 0.4034 MVIANNKARTRAVEKNGVLGQNLTVTSCSSSTIPLAPVYYPTDDEFKDPLEFIYKIRPEAEKFGICKIVPPNNWKPPFALDLNTFTFPTKTQAIHKLQARTAASDSKTFDLEYSRFLEGHCGKKSRKRVVFEGEDLDLCKLFNAVKRFGGYDKVVDEKKWGDVARFVRPSGKVSECAKHVLCQLYREHLYDYENFNNKMNQGTVRSCKKGVQEDLKTDHGVGSLGSAPKMHQRSNDCLKGKICKLKEEEHDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPVGNWYCFNCLSSDRESFGFVPGKHYSLDAFRRIADRSRKRWFGSGPVSRVQIEKKFWEIVEGLVGEVEVMYGNDLDTSVYGSGFPRATDQKSESIDEKLWQEYSNNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENKVPVYSILQEPGNFVITFPKSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVAQYGDVDSRGYSYLKKELLRILDKEKSWREKLWKSGITKSSRMAPRSCPQYVGTEEDPACIICQQYLYLSAVVCKCRPSSFVCLEHWEHLCECKNVKRRLLYRHSLAELYDLTFFMDKYTSEDKAEYRSVRRQSSCLGPLTKKVKGSSITFTQLATEWILRSSTILQSPFSSDAFATAIRKAEQFVWAGSEMDSVRDMVKILIEAQKWAEGIRDCVTKIEFWLSHQDSGVKKVHLEFVDELLRFNPSPCNEPCHHNLKEYAEEARSLAQAIDTALSICSKMSELELLYSRACGLPIYVKEIKKLKGKISSTKAWLHSVRKCISARHPVELEVDVLYKLKSEIVDLQVQLPEIDVLHNLLSQAESCSTQCREMLEGSMNIKNVGLLLKEWDKFTVGVPELKLLRQYHTEAVSWVSHFNDVLRRVHMQEDQHNAVDELEYIFYEGLSLKIQVEELPLVEIELKKANCREKALKACDSKMSLEFIQQLLNEATILQIEGEKQFVKLSCVLAVAFPWEDRARQILSHEAPISDFEDMMRASENIFAILPSLEKVKDVLSEANSWLRNTKPYLVSSTCASNSSRKVEDLQMLVSQSKLLKISLEESRMLELVLKNCKAWEYKACSLLEDAQCLFELDNIVHGISSGLMSKVEDLIAGIQSAITSSILLGFDFNEIAKLQACCSTLQWCRRALSFCNHSPSLEEVLEVAEGLSHSRVSGALLKVLVDGVEWLRRALEGIYGPQNSRKCKLTDVEDILTDYKTINMTFAAVNCQLEEAIRKHKLWQEQVHQVFGLSPRERSWSSLLELKEHGDTIAFSCSELDLILSEVEKVENWKKNCMDSIGTSVHNENSLLDGLQKIEQTLDRSLFIHGTLQGQKAQNLCICCFIDSKDQEFLTCSICMYCYHCRCIGLTARDIGLANYKCPYCEILMGEFRCKNGDGLLRFGKKHVELKVLTELLSEAEHFCLWIDERDVLNQLVEKALACKCCLREIVNLALANVEEDISTISEKLTIAIKACEVAGVCDKHDNSDLELALAKNLWKIQAKRLLNDVRKPTIQQIQKHLKEGLAMEISPEDHYMLKLTNVNHVSLQWAELAKKVANDSGELALHKVFELVEEGENLLVDVDEELRIVRARCMLYCICRKPFDPIRMIACVHCSEWYHFDCMKLPSTRDVYICPACNPCPEVLPTNHERLSNGKFEEPKTPSPRHTNPRKKRSYKMYERGDEDRDNSNYRYSSGIQFLRWQNRKPFRRATKKRVELMSLSPFLCTQQQQLCIVDRDSH* 1850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0134 1849 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Lan17g0134 1849 CDD ARID 105 193 - -
Lan17g0134 1849 Pfam ARID/BRIGHT DNA binding domain 126 193 IPR001606 GO:0003677
Lan17g0134 1849 ProSitePatterns Zinc finger PHD-type signature. 254 298 IPR019786 -
Lan17g0134 1849 SMART bright_3 104 198 IPR001606 GO:0003677
Lan17g0134 1849 SMART JmjN_1 35 76 IPR003349 -
Lan17g0134 1849 MobiDBLite consensus disorder prediction 1784 1798 - -
Lan17g0134 1849 Pfam C5HC2 zinc finger 634 685 IPR004198 -
Lan17g0134 1849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1693 1749 IPR013083 -
Lan17g0134 1849 SMART PHD_3 1706 1748 IPR001965 -
Lan17g0134 1849 SMART PHD_3 1449 1495 IPR001965 -
Lan17g0134 1849 SMART PHD_3 253 299 IPR001965 -
Lan17g0134 1849 SUPERFAMILY FYVE/PHD zinc finger 1447 1495 IPR011011 -
Lan17g0134 1849 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 34 1038 - -
Lan17g0134 1849 Gene3D Cupin 291 541 - -
Lan17g0134 1849 SUPERFAMILY ARID-like 86 206 IPR036431 GO:0003677
Lan17g0134 1849 SMART ARID_2 100 193 - -
Lan17g0134 1849 ProSitePatterns Zinc finger PHD-type signature. 1707 1747 IPR019786 -
Lan17g0134 1849 Pfam PHD-finger 253 300 IPR019787 -
Lan17g0134 1849 CDD PHD_RSF1 254 298 - -
Lan17g0134 1849 MobiDBLite consensus disorder prediction 1762 1798 - -
Lan17g0134 1849 Gene3D Cupin 18 128 - -
Lan17g0134 1849 SUPERFAMILY FYVE/PHD zinc finger 247 301 IPR011011 -
Lan17g0134 1849 ProSiteProfiles Zinc finger PHD-type profile. 251 301 IPR019787 -
Lan17g0134 1849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 290 IPR013083 -
Lan17g0134 1849 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Lan17g0134 1849 SUPERFAMILY Clavaminate synthase-like 383 572 - -
Lan17g0134 1849 PANTHER LYSINE-SPECIFIC DEMETHYLASE 34 1038 - -
Lan17g0134 1849 Pfam JmjC domain, hydroxylase 424 540 IPR003347 -
Lan17g0134 1849 SUPERFAMILY FYVE/PHD zinc finger 1701 1754 IPR011011 -
Lan17g0134 1849 ProSiteProfiles JmjC domain profile. 391 557 IPR003347 -
Lan17g0134 1849 Pfam jmjN domain 37 70 IPR003349 -
Lan17g0134 1849 ProSiteProfiles ARID domain profile. 103 197 IPR001606 GO:0003677
Lan17g0134 1849 SMART cupin_9 391 557 IPR003347 -
Lan17g0134 1849 Pfam PLU-1-like protein 908 1198 IPR013637 -
Lan17g0134 1849 Pfam PLU-1-like protein 1149 1405 IPR013637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0134 Lan-Chr17 799093 815183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0134 304 683 JUMONJI Transcription Factor Family AT1G08620 41.007 1.41e-90 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan17g0134 PLU-1 7.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0134 K11446 - gmx:100789512 3009.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1458 1 24593332 24605785 Lan17g0134 17 799093 815183 PCT
Lan1g1942 1 34669731 34678070 Lan17g0134 17 799093 815183 PCT