Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0117 ATGGAGGCAAGGGAAGTTGAGAAGAAAGCAAAGGAAGCATTTTTCGACGATGATTTCATCGCCGCCGTTGATCTCTACTCTCAAGCAATTCTTTTGGATCCTAACAACGCCGATCTCTTTGCCGATAGAGCTCAAACTCATATTAAACTCAATTGCTTCACTGAAGCTATTTCTGATGCCAACAAAGCTATTCAATTCAACCCTTCTTTGTTTAAGGCCTATCTTCGTAAAGGGATTGCTTGTATTAAGCTTGAAGAATATCATACTGCCAAGTTAGCACTACAAATTGGTGCCTCTTTTGCACCAAATGATTCAAGATTCGCCAAATTGATCCAAGACTGTGATCGTTATATTGCAGAGGAACCAAGTAGTCTTACTAGCACCATATCACCAAATGGGCCTATAGCGGCTGTACCATCGGGTGATACAAGTGCTGGAACAACTAAAGAAGCTGAAAGAGACAGTTTGGTAACCCAAACCAATGAAGTTGCGTCAATGGGACCAAAATACAGGCATGAATATTACCAGAAGCCAGAAGAAGTGGTTGTTACAATATTTGCAAAAGGCATACCAGCAAAAGACGTGGTCGTTGACTTCGGTGAACAGATTCTGAGTGTTACTATTGATGTTCCTGGCCAAGGTGCCTACCATTATCAACCTCGATTGTTTGGAAAGATAGTACCTGATAAGTGCAGAATTGCGGTGTTGTCAACTAAAGTCGAAATCCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTAGAATATAGCAAAGATGTGCTTCCCCAAAAAATAAACACTCTCACAGTTCAATCTGAAAGGCCTACATACCCATCATCAAAGCCAAGGGCAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGGAGAAGGAAGAAAGGCTAGATGGTGATGCTGCTTTGAATAAATTGTTCCGCGATATTTACCAAAGTGCAGACGAGGACATGAGGAGAGCGATGAGCAAGTCTTTTTTGGAGTCAAATGGAACAGTGCTGTCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTAGAAGGTAGTCCTCCAGAGGGCATGGAATTGAAGAAATGGGAGTACTGA 1107 0.4173 MEAREVEKKAKEAFFDDDFIAAVDLYSQAILLDPNNADLFADRAQTHIKLNCFTEAISDANKAIQFNPSLFKAYLRKGIACIKLEEYHTAKLALQIGASFAPNDSRFAKLIQDCDRYIAEEPSSLTSTISPNGPIAAVPSGDTSAGTTKEAERDSLVTQTNEVASMGPKYRHEYYQKPEEVVVTIFAKGIPAKDVVVDFGEQILSVTIDVPGQGAYHYQPRLFGKIVPDKCRIAVLSTKVEIRLAKAEAINWTSLEYSKDVLPQKINTLTVQSERPTYPSSKPRARDWDKLEAQVKKEEKEERLDGDAALNKLFRDIYQSADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMELKKWEY* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0117 368 MobiDBLite consensus disorder prediction 348 368 - -
Lan17g0117 368 SUPERFAMILY HSP20-like chaperones 159 263 IPR008978 -
Lan17g0117 368 ProSiteProfiles CS domain profile. 167 256 IPR007052 -
Lan17g0117 368 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
Lan17g0117 368 SUPERFAMILY TPR-like 3 114 IPR011990 GO:0005515
Lan17g0117 368 ProSiteProfiles SGS domain profile. 277 368 IPR007699 -
Lan17g0117 368 SMART tpr_5 37 70 IPR019734 GO:0005515
Lan17g0117 368 SMART tpr_5 71 104 IPR019734 GO:0005515
Lan17g0117 368 SMART tpr_5 3 36 IPR019734 GO:0005515
Lan17g0117 368 Pfam CS domain 171 246 IPR007052 -
Lan17g0117 368 Gene3D - 168 259 IPR008978 -
Lan17g0117 368 CDD p23_CS_SGT1_like 173 256 - -
Lan17g0117 368 Pfam SGS domain 286 366 IPR007699 -
Lan17g0117 368 PANTHER PROTEIN SGT1 HOMOLOG A 3 368 - -
Lan17g0117 368 PANTHER PROTEIN SGT1 HOMOLOG 3 368 IPR044563 GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0117 Lan-Chr17 678829 682601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0117 3 95 U-box Gene Family AT3G07370 31.183 2.26e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0117 K12795 - gmx:100784022 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0117 17 678829 682601 Lan6g0091 6 611790 615863 LSH