Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0113 ATGGAAAACAAAAACATATTCTTATCAGCATTAAGTGTAGGAGTAGGATTGGGTATTGGATTAGCCTCTGGACAAAGCGTTTCAAAATGGGGAGGAAACAACAACAATAACAACAATAACAATAATAATAATATTAACATTACTCCTCAGAATATAGAACAAGAAATGCTACGTTTAGTTGTTGATGGTAGACATACCAATCTCACTTTTGATCATTTCCCTTATTATCTCAGTGAGCAGACACGGGTGTTGCTGACAAGTGCTGGTTATGTCCATTTAAAGCATGCTGAAGTTTCTAAATATACGCGCAATCTTGCTCCGGCGAGCCGAACTATTCTGCTCTCAGGGCCTGCAGAACTTTACCAACAGGTGCTTGCAAAGGCTTTAGCTCACTATTTTGAGGCCAAGTTGCTTCTATTAGATTTAACTGACTTTTCATTGAAGATTCAGAATAAATACGGTTCTTCTGGTAACAAAGAATCTTGTTTCAAAAGGTCTACTTCAGAGTCAACTATGGAGCGGTTATCTGACCTGTTTGGATCATTTTCAATCTTTCCTAACAGGGAGGACACTAAAGTTGCAGGAAAAATGCATAGGCAAAGCAGTGGAGTGGAACTCCGATCAATGGAAGGTGAAGGATCTTGTAATCCTTCTAAGCTTCGTCGGAATGTGTCTGCATCTGCAAATATGAGTAGCCTTGCTTCACAAAGCAGTCATACAAATTCAGCTCCTATGAAGCGCACAGCCATTTGGTCATTTGATGAAAGGCTACTTATACAAACTCTTTACAAGGTTCTGGTTTTTGTGTCAAAAACCTATCCCATTGTGCTATATTTGAGGGATGTTGATAAGCTGTTAAATAGATCACAAAGGACATATAACCTTTTCCAGAAAATGTTGAAGCAAATATCCGGACCGATTCTGATTCTTGGTTCACGAGTTCAGGAGTCTGGTGATGACTACAAAGAGGTGGATGAGAGTCTTAGTTCCCTCTTCCCTTACAACATAGAAATCAAGCCTCCAGAAGATGAATCCCAGCTTGTCAGCTGGAAATCTCAGTTCGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAGGAACCATATCATGGAAGTGCTTTCAGCCAATGATCTTTATTGTGATGACCTGGATCGCATCTGCGTGGCAGACACAATGGTTCTCAGTAACTATATACAAGAGATTGTTGTCTCGGCGATTTCCAATCATTTAATGAATAACAAAGATCCTCAATACAGAAATGGAAAACTTGTTATTTCATGCAATAGTTTGTCCCATGCATTGGATATATTCCAGGAGGGAAAAATCAATGGAAGAGATACATTAAAATTAGAAGCTCAGCGAGCTGTAGCACCCGAGCAAAGAGAGGATGGAGCTGTTGTGAAACCTGAAGCAAAGGCTGAAAATCCTGCTCCTGCGACAAAGGCTGAACCTGAAATATCAACTTCTGAGGGAAAAACTGAAGTTCCTCCGGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCCGCAAATGAGATTGGTGTAACATTCTCCGATATTGGTGCTTTAGATGACACCAAGGAATCCCTTCAAGAACTGGTAATGCTTCCTCTGCGGAGGCCAGACCTTTTTGCTGGAGGCCTTTTAAGTCCTTGTAGAGGAATATTGCTATTTGGGCCTCCTGGCACAGGGAAGACAATGCTGGCAAAGGCCATTGCAAACGAGGCTGGAGCAAGTTTCATAAATGTATCCATGTCTACCATCACTTCTAAATGGTTTGGTGAGGATGAGAAGAATGTTCGTGCTTTATTTACACTTGCAGCCAAGGTCTCCCCAACCATTATATTTGTAGATGAGGTTGATAGCATGCTTGGGCAACGGTCCAGAGTCGGAGAGCATGAAGCCATGCGCAAAATTAAGAATGAATTTATGTCCCATTGGGACGGGCTTATGACAAACAAAGGGGAGCGTATCCTTGTTCTTGCTGCAACCAATAGGCCCTTTGACCTGGATGAAGCGATTATAAGGCGGTTTGAAAGGAGAATTATGGTGGGGCTACCATCTGTGGAGAACAGAGAAAAGATTTTGAGGACTCTTTTGTCAAAAGATAAGGTGGACGAGGGGCTTAATTTTAAGGAACTCGCAACTATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTCTGTACAACTGCTGCTTATAGACCTGTTAGAGAGTTGATTCAACAAGAGTTACTAAAGGATAAGAAGAAAAAGCAGAAAGATGCTGAAAAACAAAACAACAATGTCCAAGATGTTGTACAAGGAGATCTGAATACAGTAGAGGAAATTAAACAAGAAAGAGAAATTAACCTTAGGCCTTTGAATATGCAGGATTTCAAAGAAGCAAAGAAACAGGTTGCTGCAAGCTATGCAGCTGAAGGGGCTGGAATGAATGAATTGAAGCAGTGGAATGAGTTGTATGGGGAAGGGGGTTCTAGGAAGCAAGAGCAGTTATCTTACTTCCTATGA 2523 0.4098 MENKNIFLSALSVGVGLGIGLASGQSVSKWGGNNNNNNNNNNNNINITPQNIEQEMLRLVVDGRHTNLTFDHFPYYLSEQTRVLLTSAGYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKIQNKYGSSGNKESCFKRSTSESTMERLSDLFGSFSIFPNREDTKVAGKMHRQSSGVELRSMEGEGSCNPSKLRRNVSASANMSSLASQSSHTNSAPMKRTAIWSFDERLLIQTLYKVLVFVSKTYPIVLYLRDVDKLLNRSQRTYNLFQKMLKQISGPILILGSRVQESGDDYKEVDESLSSLFPYNIEIKPPEDESQLVSWKSQFEEDMKMIQVQDNRNHIMEVLSANDLYCDDLDRICVADTMVLSNYIQEIVVSAISNHLMNNKDPQYRNGKLVISCNSLSHALDIFQEGKINGRDTLKLEAQRAVAPEQREDGAVVKPEAKAENPAPATKAEPEISTSEGKTEVPPDNEFEKRIRPEVIPANEIGVTFSDIGALDDTKESLQELVMLPLRRPDLFAGGLLSPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRSRVGEHEAMRKIKNEFMSHWDGLMTNKGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLSKDKVDEGLNFKELATMTEGYTGSDLKNFCTTAAYRPVRELIQQELLKDKKKKQKDAEKQNNNVQDVVQGDLNTVEEIKQEREINLRPLNMQDFKEAKKQVAASYAAEGAGMNELKQWNELYGEGGSRKQEQLSYFL* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0113 840 SMART AAA_5 554 691 IPR003593 -
Lan17g0113 840 MobiDBLite consensus disorder prediction 455 506 - -
Lan17g0113 840 Coils Coil 746 770 - -
Lan17g0113 840 Gene3D - 690 770 - -
Lan17g0113 840 Pfam AAA+ lid domain 712 747 IPR041569 -
Lan17g0113 840 Gene3D - 517 689 IPR027417 -
Lan17g0113 840 CDD AAA 556 689 - -
Lan17g0113 840 MobiDBLite consensus disorder prediction 456 470 - -
Lan17g0113 840 Pfam ATPase family associated with various cellular activities (AAA) 558 688 IPR003959 GO:0005524|GO:0016887
Lan17g0113 840 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 840 - -
Lan17g0113 840 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 840 - -
Lan17g0113 840 ProSitePatterns AAA-protein family signature. 661 680 IPR003960 GO:0005524|GO:0016887
Lan17g0113 840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 773 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0113 Lan-Chr17 653762 659628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0113 518 748 Calmodulin-binding Proteins AT3G56690 38.462 1.01e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0113 - - gmx:100808011 1264.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0113 17 653762 659628 Lan6g1245 6 12717991 12724939 PCT