Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0112 ATGGGTCACAAGTACAGCTCCAGCAACCAACTCAACTCTGAACCTCTCTCACCCGGTCCTAATCCTAATCTAAATCCTGATTCCAATCTCGATACTAATCGTGATCCTATTTCTGATCCTAATCACAATGACGACTCAGTCCTCCCTCCTTTTCCCAAACCCTTACCATCCTACGTCACATATTTCATGGGCCGCGTCTTCGGCAAGCCCATGGAAGATGCGCGTTCCACTTACACCTTCGGCCGACAACTCGGCCAAGGTCAATTTGGGGTGACTCATTTAGTCACCCACAAATTGACCAAAGAACAATTCGCGTGTAAGTCAATCGCCACGCGCAAACTCATCCACGCTGATGACATTGAAGATATTCGCCGCGAGGTTCAGATCATGCACCACCTCACCGGCCACCGCAACGTTGTCGAGCTCAAGGCTGCTTACGAGGATCGGTATTCTGTTAAACTGATAATGGAGCTCTGCGCTGGTGGCGAACTCTTTGGAAGGATTATTAAAAAGGGATATTATTCGGAACGTGCGGCGGCGGATTTGTGCCGCCAGATTATGACGGTGGTGCATGATTGTCATAGTATGGGGGTTATGCATCGGGATCTGAAGCCTGAGAATTTTTTGTTCCTTAGTAATGATGAGAGTTCACCACTTAAATTAACTGATTTTGGTCTCTCCGTTTTTTTCAAACCAGGAGATGTATTTACAGATTTAGTGGGAAGTGCTTATTATGTTGCTCCTGAGGTGCTTATGAGAAGTTATGGACCTGAAGCTGATATTTGGAGTGCTGGTGTTATCCTGTACATTCTCCTCTCTGGTTTCCCTCCCTTCTGGGCAGAAAATGAAAGGGGTATCTTCAATGCTGTTCTCTGTGGACATATTGATCTTGAATCAGAACCTTGGCCTTCCATATCAACTAATGCGAAAGATTTGGTCAAGAAGATGTTACGAAGTAACCCTGAAGAACGGCTTTCAGCAGTTGATGTCCTAAATCATCCTTGGATGAGAGAAGATGGAGCATCTGATGAGCCTCTTGATATTGCTGTTTTATCCAGAATGAAACAATTTACGGCGATGAACAAGCTAAAGAAAGTAGCTCTGAAGTTTATTGCTGAAAATCTTTCCGAAGAGGAAATAATTGGCTTGAAGGAAATGTTCAAATCCTTGGACACAGATAATAGTGGAACGGTCACTTTTGAAGAGCTGAAAGCTGGTCTCCTGAAACTGAGTACTAAGATTTCTGAGTCTGAAATAAGGCAGTTCATGAAAGCGGCTGATGTAGATGGAAATGGAGTCATTGATTATATTGAATTTATAACAGCTACCATGCACATGAATAGAGTGGAAAGAGAGGACCACCTATATAAAGCCTTCGAATATTTTGACCGGGATGGTTGCGGGTACATCACAATGGAAGACTTAGAATCTGCCCTTAAGAAGTATAACATGGGTGATAAGAAAACAATGAATGAGATCATTGCTGAAGTTGACACAAACAATGATGGAAGGATCAACTATGCCGAGTTCGTAGCGATGATGAGGAAAGGCAACCCGGAATTGGTAACCAAGAACAGGGTACGCACATATTGA 1593 0.4363 MGHKYSSSNQLNSEPLSPGPNPNLNPDSNLDTNRDPISDPNHNDDSVLPPFPKPLPSYVTYFMGRVFGKPMEDARSTYTFGRQLGQGQFGVTHLVTHKLTKEQFACKSIATRKLIHADDIEDIRREVQIMHHLTGHRNVVELKAAYEDRYSVKLIMELCAGGELFGRIIKKGYYSERAAADLCRQIMTVVHDCHSMGVMHRDLKPENFLFLSNDESSPLKLTDFGLSVFFKPGDVFTDLVGSAYYVAPEVLMRSYGPEADIWSAGVILYILLSGFPPFWAENERGIFNAVLCGHIDLESEPWPSISTNAKDLVKKMLRSNPEERLSAVDVLNHPWMREDGASDEPLDIAVLSRMKQFTAMNKLKKVALKFIAENLSEEEIIGLKEMFKSLDTDNSGTVTFEELKAGLLKLSTKISESEIRQFMKAADVDGNGVIDYIEFITATMHMNRVEREDHLYKAFEYFDRDGCGYITMEDLESALKKYNMGDKKTMNEIIAEVDTNNDGRINYAEFVAMMRKGNPELVTKNRVRTY* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0112 530 Pfam EF-hand domain pair 383 443 IPR002048 GO:0005509
Lan17g0112 530 Pfam EF-hand domain pair 453 515 IPR002048 GO:0005509
Lan17g0112 530 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Lan17g0112 530 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 520 - -
Lan17g0112 530 Pfam Protein kinase domain 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0112 530 ProSiteProfiles Protein kinase domain profile. 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0112 530 SUPERFAMILY EF-hand 374 515 IPR011992 -
Lan17g0112 530 SMART efh_1 382 410 IPR002048 GO:0005509
Lan17g0112 530 SMART efh_1 489 517 IPR002048 GO:0005509
Lan17g0112 530 SMART efh_1 418 446 IPR002048 GO:0005509
Lan17g0112 530 SMART efh_1 454 482 IPR002048 GO:0005509
Lan17g0112 530 ProSitePatterns EF-hand calcium-binding domain. 427 439 IPR018247 -
Lan17g0112 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Lan17g0112 530 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Lan17g0112 530 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 1 35 520 - -
Lan17g0112 530 CDD STKc_CAMK 78 335 - -
Lan17g0112 530 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Lan17g0112 530 CDD EFh 383 442 IPR002048 GO:0005509
Lan17g0112 530 Gene3D - 361 514 - -
Lan17g0112 530 ProSiteProfiles EF-hand calcium-binding domain profile. 486 520 IPR002048 GO:0005509
Lan17g0112 530 Gene3D Transferase(Phosphotransferase) domain 1 163 354 - -
Lan17g0112 530 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Lan17g0112 530 Gene3D Phosphorylase Kinase; domain 1 80 162 - -
Lan17g0112 530 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Lan17g0112 530 Gene3D - 355 444 - -
Lan17g0112 530 MobiDBLite consensus disorder prediction 1 51 - -
Lan17g0112 530 CDD EFh 457 515 IPR002048 GO:0005509
Lan17g0112 530 MobiDBLite consensus disorder prediction 1 36 - -
Lan17g0112 530 SUPERFAMILY Protein kinase-like (PK-like) 75 349 IPR011009 -
Lan17g0112 530 SMART serkin_6 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0112 530 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0112 Lan-Chr17 646572 652670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0112 64 526 EF-hand Containing Proteins AT4G23650 76.509 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan17g0112 Pkinase 8.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0112 K13412 - gmx:100817321 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0112 17 646572 652670 Lan18g1119 18 16172022 16177988 LSH