Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0108 ATGGACAAATACACTCGCCACGTTACACACACCAAACATGTTAAAGAAGCTGAATTTCTTAACAACCGTTCACACCCAAAAGTGGTGAGAATAACCGTCACTGACACCGACGCCACTGACTCCTCCAGTGATGAAGAACATGAATGCTCCACGCGCCACCGTCCACCCACAAAGTTCATCAATGAGATTATTTTTAAGCCGTTTAAAAAAGACACCGTTTTTTCAAGGAAGAGAACCAGTGTCAAACCTAAGTCCAGTGCTGTCGGAAAACCAATAATTCCGGCGAGTGTGCAACCGGAGAAGTTTGCCGCCGGGAAGAAATACCGAGGAGTGAGGCAGAGGCCGTGGGGAAAATGGGCGGCAGAAATAAGAGACCCAGTCCGGCGCGTGAGGTTGTGGTTAGGGACCTATAACACTGCTGAAGAAGCTGCAATGGTGTACGACAACGTCGCTATTAAGTTACGTGGACCACACGCGCTGACAAATTTCATTACTCCGTCACCGGAAGATAAAAAACCGTCCACCGTTACCCACAGTGATGATATCTCTGTAGAAGAATCTTACACCCAAAATTGTTTCTTTTCTCCCACTTCCGTTCTTCAACGTTGTTCCTTATCAGAAGAAGCTGAATCAGTAACCAGAGATGAAGTATGCGAAAATTCATGTGTTTCACAGAATTTGTTTGAAACTGAAAAACTTAACTTTATGTCGTCGCAAATTCCAAACACTACGGTATTTGATTTTCAAGGTTCTTTCATGGCACATGATATTTTCAACATTGAGGAAACTATATTCCTCAACGATGATTGCAAGAGTGATATGTTTCTCACTACTTGTGAGGATTTACAATTGGACTTAGATTTAAAGGGATGGTACGAAAAAGATGATGAATTTTTCGAAGAGATTAATGATGAAATGTTTGATTTAGATTCACTTGTTGCTAAGTGA 948 0.4209 MDKYTRHVTHTKHVKEAEFLNNRSHPKVVRITVTDTDATDSSSDEEHECSTRHRPPTKFINEIIFKPFKKDTVFSRKRTSVKPKSSAVGKPIIPASVQPEKFAAGKKYRGVRQRPWGKWAAEIRDPVRRVRLWLGTYNTAEEAAMVYDNVAIKLRGPHALTNFITPSPEDKKPSTVTHSDDISVEESYTQNCFFSPTSVLQRCSLSEEAESVTRDEVCENSCVSQNLFETEKLNFMSSQIPNTTVFDFQGSFMAHDIFNIEETIFLNDDCKSDMFLTTCEDLQLDLDLKGWYEKDDEFFEEINDEMFDLDSLVAK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0108 315 CDD AP2 106 163 IPR001471 GO:0003700|GO:0006355
Lan17g0108 315 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Lan17g0108 315 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Lan17g0108 315 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
Lan17g0108 315 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Lan17g0108 315 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Lan17g0108 315 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 306 - -
Lan17g0108 315 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Lan17g0108 315 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 3 306 - -
Lan17g0108 315 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0108 Lan-Chr17 615965 617000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0108 3 208 AP2-EREBP Transcription Factor Family AT4G27950 46.396 1.04e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan17g0108 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0108 - - lang:109330775 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0108 17 615965 617000 Lan6g0086 6 579921 581307 LSH
Lan17g0108 17 615965 617000 Lan6g1235 6 12597643 12599539 PCT