Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0103 ATGGTAACATATTCAGCATCATATTGTTTCAAACCCTCTCACCCAATAATCCATATCCTCTTATCTTCTTATTATATTGTTTCCTGCATCACTTTCTTCTCAAGTTCTCTTCTTTTTCCCTTAGGAAGAAGGACCAATTTTTTCAGTGCCCTTCTTTCTATACATTGTTTTTTCATGTACAGAATGCAAGAACAAAACACACAGTATGAACTCCAAGATGGAGCTGATATTGGTTACTCTTTATCAAAGCTCATATTATCAAGTAGAACAAATACTCTTGACTCAATTTTCTCTCATTGCACACCAACAAATTCAAATTCCACCACCACAACTTCAAGCACTAGCACCACCAGTACCAATTCCATATTGGATTGCTTTGAGCCTTTAACCTCTTCTACCTTTGACCCTTTAACCTCTTCTACCTTTGAGCCTTTGGGTTCTTCAGTATATCTTCGCCAAAGAGATATCCTTCAAAAGTTTTACCATGAAAACAGGGTAAAAAATGGATCTTTTGTCCCATCTTTTTCAATGGCAAATCCAACTCTAAATTCTGCTGCATACACAAGTTCTTTGAGTTCTTTGGTGAACCATTCTTGCAAGAAGAAACAGTACCGTGGAGTGAGACAAAGACACTGGGGAAAATGGGTCGCAGAGATTAGATTACCACAAAACAGAATGAGAGTGTGGCTTGGAACTTATGAAACTGCTGAAGCTGCTGCTTATGCTTATGATCGTGCAGCTTATAAGCTTCGTGGAGAGTATGCACGTTTGAATTTCCCGAATCTTAAGGATCCTACTACTTTAGGATTTGGAGATTCAACTAGATTGAATGCTCTCAAGAACTCTGTGGATGCTAAAATACAAGCAATTTGTCTAAAAGTGAAAAAGGAGAAAGCTAAGAAGAATGCTGCAAAGAAGCTTAAATCCGGTAATGACTCAAACAGAGAGAAATCTTCGGCCAAGAATGTTAACTCGTGTTCTATTTCTTCATCCTTGCCACAGTTCAATTTTTATGATAATTGGGCAAATGGGTTGTTATTGCCTAGTGTTTCAGAGGATGGAGTTTGGAAGGGGGAGAACTCGGCGTCCCCGGCTTCGGCTTCGGCTTCTACAGAATTTCCAATGATGGTAACAGATGAACCAGAGTTTGAAGGATGTTCACTTGCAAGGATGCCATCCTTTGATCCTGAGTTGATTTGGGAAGTTCTCGCAAATTAG 1218 0.3916 MVTYSASYCFKPSHPIIHILLSSYYIVSCITFFSSSLLFPLGRRTNFFSALLSIHCFFMYRMQEQNTQYELQDGADIGYSLSKLILSSRTNTLDSIFSHCTPTNSNSTTTTSSTSTTSTNSILDCFEPLTSSTFDPLTSSTFEPLGSSVYLRQRDILQKFYHENRVKNGSFVPSFSMANPTLNSAAYTSSLSSLVNHSCKKKQYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTTLGFGDSTRLNALKNSVDAKIQAICLKVKKEKAKKNAAKKLKSGNDSNREKSSAKNVNSCSISSSLPQFNFYDNWANGLLLPSVSEDGVWKGENSASPASASASTEFPMMVTDEPEFEGCSLARMPSFDPELIWEVLAN* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0103 405 CDD AP2 202 262 IPR001471 GO:0003700|GO:0006355
Lan17g0103 405 MobiDBLite consensus disorder prediction 302 325 - -
Lan17g0103 405 PRINTS Ethylene responsive element binding protein signature 204 215 IPR001471 GO:0003700|GO:0006355
Lan17g0103 405 PRINTS Ethylene responsive element binding protein signature 226 242 IPR001471 GO:0003700|GO:0006355
Lan17g0103 405 Gene3D AP2/ERF domain 202 261 IPR036955 GO:0003700|GO:0006355
Lan17g0103 405 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 61 405 - -
Lan17g0103 405 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 61 405 - -
Lan17g0103 405 SUPERFAMILY DNA-binding domain 203 260 IPR016177 GO:0003677
Lan17g0103 405 SMART rav1_2 203 266 IPR001471 GO:0003700|GO:0006355
Lan17g0103 405 Pfam AP2 domain 203 253 IPR001471 GO:0003700|GO:0006355
Lan17g0103 405 ProSiteProfiles AP2/ERF domain profile. 203 260 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0103 Lan-Chr17 587551 589120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0103 75 405 AP2-EREBP Transcription Factor Family AT1G64380 45.658 2.42e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan17g0103 AP2 7.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0103 - - lang:109331119 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0103 17 587551 589120 Lan6g0081 6 545130 546439 LSH