Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0087 ATGAGTTGTTGGAGTAGTAATAGTAGTAACCCATCGTTGCATGGAGTTACAAACACAAACAAGAAGTTGAAGGGAGTTCGACGTAGAAAATGGGGCAAGTGGGTATCTGAGATTCGTGTCCCCGGAAAACAAGAACGTCTCTGGTTAGGGACTTATTCTACGGCGGAGGCTGCGGCGGTGGCACATGACGTGGCAGTGTATTGTCTAAGAAGACCTTCTTCATTGGACAAACTCAACTTTCCTGAGACATTGTCTTCATATGATGTTCTAAAAAGAGATGACATGTCACCAAAATCAGTTCAAAAGGTTGCTTCAGATGTTGGAATGGATGTTGATGCTAGAAACATTGCAGGAATGAAAACAACGTTAGTGGTAGAAGAAAATAATAATAATAATTATGAGAAGAAAAGTAGTAGTGATGATTGTGATTTGTTTTGGTTAGAAGAATTAGGTGATGTTTCTGAAGGAAGTGAAGAATATGGTTGTAGAGAAGGTGAGGCATTGAACATTTCAGTAGAAGATTATCTTTAA 531 0.3898 MSCWSSNSSNPSLHGVTNTNKKLKGVRRRKWGKWVSEIRVPGKQERLWLGTYSTAEAAAVAHDVAVYCLRRPSSLDKLNFPETLSSYDVLKRDDMSPKSVQKVASDVGMDVDARNIAGMKTTLVVEENNNNNYEKKSSSDDCDLFWLEELGDVSEGSEEYGCREGEALNISVEDYL* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0087 176 MobiDBLite consensus disorder prediction 1 19 - -
Lan17g0087 176 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Lan17g0087 176 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Lan17g0087 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 133 - -
Lan17g0087 176 SMART rav1_2 22 87 IPR001471 GO:0003700|GO:0006355
Lan17g0087 176 MobiDBLite consensus disorder prediction 1 21 - -
Lan17g0087 176 ProSiteProfiles AP2/ERF domain profile. 22 81 IPR001471 GO:0003700|GO:0006355
Lan17g0087 176 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Lan17g0087 176 CDD AP2 21 83 IPR001471 GO:0003700|GO:0006355
Lan17g0087 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 15 133 - -
Lan17g0087 176 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Lan17g0087 176 Gene3D AP2/ERF domain 21 83 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0087 Lan-Chr17 484947 485769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0087 22 113 AP2-EREBP Transcription Factor Family AT1G71520 67.021 3.48e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan17g0087 AP2 1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0087 - - gmx:100816257 201.83