Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0081 ATGGCGGCACACGACGGAGAAGCCTTAGATTTTGAGCCTGAGGACGATGACTTGATGGACGAGGACGCCGCCGTCGACGCCGCCGGCACTTCTCCCAGTGCACCGCCTCTCCCCAAACTCAAATCCGCCATCACCTCTTCTTCTTCCATTTCCGTTCCCAAGAAGACCAAGGGTCGCGGATTCCGTCAAGAAACCGATACCAACCGTAACAACCGGCTTGCCGGCTCTGATTTCGATTCTCTCACCACCGAGGGTGGTCCTGGCCCTCAGAGATCCATTGAAGGATGGATTATTTTGGCCACGGGCGTCCATGAGGAGGCTCAGGAGGATGATTTGCAAAATGCCTTTGGTGAATATGGAGAGATTAAGAATCTCCATTTGAATCTTGATCGTCGTACTGGTTTTGTCAAAGGTTATGCACTGATTGAATATGAGCGTGCTGAGGAAGCTCGTAATGCAATAGAGAATTTGAATGGGTCTGAGCTTCTTACACAAACCATTTATGTTGACTGGGCTTTCAGCAGTGGACCCATCAATGACTCAATCCGAAGAAAGAATACGAGACCATCTCGTGGTGAACGGCGCTCTAGGAGCCCTCGGAGAAGATATTGA 612 0.5049 MAAHDGEALDFEPEDDDLMDEDAAVDAAGTSPSAPPLPKLKSAITSSSSISVPKKTKGRGFRQETDTNRNNRLAGSDFDSLTTEGGPGPQRSIEGWIILATGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINDSIRRKNTRPSRGERRSRSPRRRY* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0081 203 PANTHER RNA-BINDING PROTEIN 8A 1 203 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lan17g0081 203 MobiDBLite consensus disorder prediction 67 87 - -
Lan17g0081 203 MobiDBLite consensus disorder prediction 9 23 - -
Lan17g0081 203 SUPERFAMILY RNA-binding domain, RBD 89 201 IPR035979 GO:0003676
Lan17g0081 203 MobiDBLite consensus disorder prediction 188 203 - -
Lan17g0081 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 167 IPR000504 GO:0003723
Lan17g0081 203 MobiDBLite consensus disorder prediction 40 54 - -
Lan17g0081 203 PANTHER BNAA05G15240D PROTEIN 1 203 - -
Lan17g0081 203 CDD RRM_RBM8 90 177 IPR033744 GO:0003729
Lan17g0081 203 PRINTS RNA binding motif protein 8 family signature 50 62 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lan17g0081 203 PRINTS RNA binding motif protein 8 family signature 87 101 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lan17g0081 203 PRINTS RNA binding motif protein 8 family signature 143 159 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lan17g0081 203 PRINTS RNA binding motif protein 8 family signature 161 173 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lan17g0081 203 Gene3D - 41 188 IPR012677 -
Lan17g0081 203 MobiDBLite consensus disorder prediction 1 90 - -
Lan17g0081 203 SMART rrm1_1 97 170 IPR000504 GO:0003723
Lan17g0081 203 MobiDBLite consensus disorder prediction 180 203 - -
Lan17g0081 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0081 Lan-Chr17 446721 449399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0081 98 172 Eukaryotic Initiation Factors Gene Family AT3G11400 28.000 3.92e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0081 K12876 - gmx:100527187 279.256