Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0079 ATGCTATATTGCACTAAGCTTATGTTTTATGTTTTCCCCAAACGTTGTTTCTTTCGAACTCTATGTACTTCAAATGCAGAAACCGTAGCTAGAAACATATATGCACTTTCTAAGCATGGTAACATTGAAGAAGCTCTTTCACTTGTTTACACACATGTTACACACTCTTCTCTGTTCCTTCAAGCCTATGCCACTTTGTTCCATGCATGTGCCCAAAAAAAATGCATCCAACAAGGCATGGCTTTGCACCATTACATACTTCAAACACACCCCACAATTCAAAATGATATCTTTCTCGCTAATCACATTATAAACATGTATTGTAAGTGTGGCCAATTGGGTTATGCTCGCTTCCTGTTTGATCAAATGCCCCGTAGAAATATTGTTTCTTGGACTGCACTCATTTCTGGATATGCCCAATGTGGCTTAATCAATGAGTGTTTCTCGTTATTTTCTGGCTTGTTTGCTCGGTTGCGTCCTAACGAATTTGCTTTTGCGAGTTTGCTTAGCGCGTGTGAGGAGCGTGATATTAAATGTGGTATGCAGGTGCATGCAGTTGCTTTGAAAATTTCTTTGGATGCCAGTGTATATGTTGCAAATGCTCTTATTACAATGTACAGCAAGTGTTCGGGTGCTGGTGGGGGTTATGATCATATATTGGGTGATGCATGGACTGTGTTCAAGTTAATGGAGTTCCGAAATCTTATATCTTGGAATTCAATGATTGCAGGTTTTCAATTTCGTGGACTTGCAGATCGAGCCATTCACTTGTTCACACATATGTACTGCAATGGTATCGGATTTGACCGTGCCACATTACTCAGTATTCTCTGTTCCTTGAATGAATATTATACTTCTGAAGACATTAATATACATCTCAGGAGCTGTTTTCAACTGCACTGCCTCATTATTAAGAGTGGTCTTATTTCAGAAGTTGAAGTGATAACTGCATTGGTAAAATCATATGCAAATCTTGGGGGACATGTTTCTGATTGTTATAAGCTCTTCCTTGATACAAGTGGCAAACGGGATATTGTGTCGTGGACTGCTATTATCACTGTGTTCGCAGAACGTGATCCCGAGCAGGCTTTCCTCCTTTTCTGCCAGCTTCATCGTGAGAATTTTGTGCCAGATTGGCATACATTCTCAATTGCCTTAAAAGCATGCGCATACTTTGTGACTGAGCAGCATGCTCTTGCGGTTCACTCACAAATAATTAAGAAGGGGTTTCGGGAAGATAAAATTCTTTCAAATGCCTTGATTCATGCTTATGCAAGGTGTGGCTCCTTAGCTTTGTCTGAACAAGTTTTTGATGAAATGGGTTGCCGTGATCTGGTTTCTTGGAATTCGATGATGAAGTCGTATGCCTTACATGGACGTGCTAAAGATGCATTGGATCTCTTCCAACAAATGAATGTCCGTCCAGATTCTACCACTTTCGTTGCGCTTCTTTCAGCTTGTAGTCATGCTGGTCTTGTTGAACAAGGTGCGAAATTTTTTAACTCTATGCCTGATACTCACGGTATTGTTCCTCAACTAGATCACTACGCCTGCATGGTTGACCTTTATGGACGAGCTGGGAAGATATCTGAGGCTGAAGAGTTGATACATAAAATGCCAATGAAACCAGATTCGGTGATATGGAGTTCGTTACTCGGATCTTGCCGCAAGCATGGTGAGACTCGCTTGGCGAAATTAGCGGCCGATAAATTTAACGAGTTGGAGCCTGAAAAATCGTTGGGATATGTACAAATGTCAAACATATATTCCTCTAGTGGGAGTTTCATTGAAGCTGGCCAGATTAGGAAGGAAATGAGAGAGTCAAAGGTGAGAAAAGAACCCGGATTAAGCTGGGTTGAGATTGGAAAACAGGTTCACGAGTTCGGCTCTGGTGGTAAACATCATCCACAGAGGGAGGCCATAGTAAGGAAGCTTGAAATTTTGATTGGTCAATTGAAAGAGATTGGTTATGCACCAGAAGTTAGCTTAGCTTTGTATGATACAGAAGAGGAGCACAAAGAAGACCAATTGTTTCATCACAGTGAGAAGATGGCACTGGTATTTGCTATAATGAATGAAGGAAAATTGAGTTATGGTGGTAAAGTGATTAAAATAATGAAGAATATTCGTATTTGTGTGGATTGCCATAACTTCATGAAATTAGCATCATATCTATGTGAGAAGGAGATTATTGTGAGAGATTCAAACAGGTTTCACCATTTCAAAAATGCAACATGCTCTTGTAATGACTATTGGTAA 2259 0.4024 MLYCTKLMFYVFPKRCFFRTLCTSNAETVARNIYALSKHGNIEEALSLVYTHVTHSSLFLQAYATLFHACAQKKCIQQGMALHHYILQTHPTIQNDIFLANHIINMYCKCGQLGYARFLFDQMPRRNIVSWTALISGYAQCGLINECFSLFSGLFARLRPNEFAFASLLSACEERDIKCGMQVHAVALKISLDASVYVANALITMYSKCSGAGGGYDHILGDAWTVFKLMEFRNLISWNSMIAGFQFRGLADRAIHLFTHMYCNGIGFDRATLLSILCSLNEYYTSEDINIHLRSCFQLHCLIIKSGLISEVEVITALVKSYANLGGHVSDCYKLFLDTSGKRDIVSWTAIITVFAERDPEQAFLLFCQLHRENFVPDWHTFSIALKACAYFVTEQHALAVHSQIIKKGFREDKILSNALIHAYARCGSLALSEQVFDEMGCRDLVSWNSMMKSYALHGRAKDALDLFQQMNVRPDSTTFVALLSACSHAGLVEQGAKFFNSMPDTHGIVPQLDHYACMVDLYGRAGKISEAEELIHKMPMKPDSVIWSSLLGSCRKHGETRLAKLAADKFNELEPEKSLGYVQMSNIYSSSGSFIEAGQIRKEMRESKVRKEPGLSWVEIGKQVHEFGSGGKHHPQREAIVRKLEILIGQLKEIGYAPEVSLALYDTEEEHKEDQLFHHSEKMALVFAIMNEGKLSYGGKVIKIMKNIRICVDCHNFMKLASYLCEKEIIVRDSNRFHHFKNATCSCNDYW* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0079 752 Pfam PPR repeat 418 442 IPR002885 -
Lan17g0079 752 Pfam PPR repeat 101 128 IPR002885 -
Lan17g0079 752 Pfam PPR repeat 129 152 IPR002885 -
Lan17g0079 752 Pfam PPR repeat 236 266 IPR002885 -
Lan17g0079 752 Pfam PPR repeat 516 540 IPR002885 -
Lan17g0079 752 SUPERFAMILY TPR-like 35 601 IPR011990 GO:0005515
Lan17g0079 752 TIGRFAM PPR: pentatricopeptide repeat domain 101 129 IPR002885 -
Lan17g0079 752 TIGRFAM PPR: pentatricopeptide repeat domain 516 539 IPR002885 -
Lan17g0079 752 TIGRFAM PPR: pentatricopeptide repeat domain 446 471 IPR002885 -
Lan17g0079 752 Pfam E motif 558 620 IPR046848 -
Lan17g0079 752 Pfam PPR repeat family 444 488 IPR002885 -
Lan17g0079 752 Pfam PPR repeat family 344 390 IPR002885 -
Lan17g0079 752 Gene3D Tetratricopeptide repeat domain 26 175 IPR011990 GO:0005515
Lan17g0079 752 Pfam DYW family of nucleic acid deaminases 656 752 IPR032867 GO:0008270
Lan17g0079 752 PANTHER - 64 279 - -
Lan17g0079 752 PANTHER - 293 621 - -
Lan17g0079 752 PANTHER - 33 173 - -
Lan17g0079 752 Gene3D Tetratricopeptide repeat domain 395 505 IPR011990 GO:0005515
Lan17g0079 752 Gene3D Tetratricopeptide repeat domain 287 394 IPR011990 GO:0005515
Lan17g0079 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Lan17g0079 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 474 IPR002885 -
Lan17g0079 752 Gene3D Tetratricopeptide repeat domain 176 286 IPR011990 GO:0005515
Lan17g0079 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Lan17g0079 752 Gene3D Tetratricopeptide repeat domain 506 578 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0079 Lan-Chr17 436619 438958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0079 63 752 Glycoside Hydrolase AT3G49170 33.949 5.33e-130 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0079 - - gmx:100799117 1231.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0079 17 436619 438958 Lan8g0820 8 10095139 10102927 PCT