Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0065 ATGCAAGGTCTTAACTACAATAGCAAGATGGTTAGGCTGAAGACATATGCTGGTCTTAGTTTGCTTGCAACTCTGGCTATTACGTATCACGCATTTAACAGCCGAGGCCAGTTTTATCCTGCAATGGTGTATCTGTCAACTTCCAAGATCAGTTTGTTGCTTCTTCTCAACATGGGTTTGGTCATTATGTGTAGTCTATGGCAATTAACAAAAAAGATATTCTTGGGTTCACTCCGAGAGGCGGAGGTAGAGAGGCTTAATGAGCAGTTGTGGAGGGAAGTTATGGAAATCCTCTTTGCAATTACTGTTTTTAGGCAGGACTTCTCTGTTACATTTCTTGCCATGGTCACAGCGCTGTTGGCAGTTAAGGCTTTGCATTGGTTGGCTCAGAAAAGGGTTGAGTACATTGAGACCACTCCTTCAGTGCCCACGTTGTCCCATATTCGGATTGTATCATTCATGGGTTTCCTTCTTCTTCTAGATAGTCTTCTTTTATACCACTTTATGAAGCATTTGATAGAAACGTGGCAGCCTTCAGTTTCAATATTCTTTTCTTTTGAGTACATGATACTTGCAACAACGACAGTTTCAATTTTTGTGAAGTATATTTTCTATGTCAGCGATATGCTTATGGAGGGACAGTGGGAAAATAAACCAGTCTTCACGTTTTACTTGGAACTCATTAGGGATTTGATTCACTTGTCTATGTATCTGTGCTTCTTCCTTGTAATTTTTGTAAACTATGGTGTTCCTTTGCACTTAATGCGGGAGCTGTATGAGACATTTAGGAACTTCAGAATCCGTGTTGCAGATTACATAAGATATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGTAAGTGATGCAACCTGCATTATCTGCCGTGAGGAGATGACTACTGCCAAGAAACTTATATGTGGACATCTTTTTCACGTTCATTGCCTCCGGTCATGGCTGGAGCGGCAGCATACTTGCCCTACCTGCCGAGCCCTGGTTGTTCCTGCAGAAAATGGGACAACTGTTGCTGGAGGGCAGCAAGGATCACAGTCAGATGCTCATCGGCAAGGTAAACATGGAACAGGGACTGGAAGCACTGCTCAAACTGAGGTTGGCAATGGGGTGGCAACTGATAATTTTAGCAGGCAAGCCAGACTTCAAGCTGCTGCTGCAGATGCTGCTTCAATATATGGGAAGTCTTATGTGTACCCCTCTGCAGCTTCTTTAGCATGCTCTCCTGGGAACACTCTTTACCCCCGGGTTCAAACATCTTTGGCTGAACCTACTAATACTGAGTTTAATGGAGAAGGAGCTTCCAGTAAACAAGTACAAAATCAGTTTGTTATCCCTGGTGGATCATCAAATGTGTCCTTTCCTCCAATGGGACACTTCCAATTTCTACCTTCACAGTCACAAGCAGCACCTGTGAATTATGGAGAGGGGTTTGGAAATGATCCGAATATGCCAAGCTCTCTGCTGGAAGCTCAAAGAAAACTTATTCAATACCAGATTGAGATTCTTCAAAATCAGCTTCAGCTTCTGCAGAGGACAAATGTTGAAAAAAGCGTGGATGATGGTGCGTCGTCATCTGTATCGGATCTTGATTATCATGGTGAGATTGGAAATGGAAAAGCATGA 1665 0.4282 MQGLNYNSKMVRLKTYAGLSLLATLAITYHAFNSRGQFYPAMVYLSTSKISLLLLLNMGLVIMCSLWQLTKKIFLGSLREAEVERLNEQLWREVMEILFAITVFRQDFSVTFLAMVTALLAVKALHWLAQKRVEYIETTPSVPTLSHIRIVSFMGFLLLLDSLLLYHFMKHLIETWQPSVSIFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWENKPVFTFYLELIRDLIHLSMYLCFFLVIFVNYGVPLHLMRELYETFRNFRIRVADYIRYRKITSNMNDRFPDATPEELNVSDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPAENGTTVAGGQQGSQSDAHRQGKHGTGTGSTAQTEVGNGVATDNFSRQARLQAAAADAASIYGKSYVYPSAASLACSPGNTLYPRVQTSLAEPTNTEFNGEGASSKQVQNQFVIPGGSSNVSFPPMGHFQFLPSQSQAAPVNYGEGFGNDPNMPSSLLEAQRKLIQYQIEILQNQLQLLQRTNVEKSVDDGASSSVSDLDYHGEIGNGKA* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0065 554 CDD RING-H2_synoviolin 298 339 - -
Lan17g0065 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Lan17g0065 554 MobiDBLite consensus disorder prediction 349 381 - -
Lan17g0065 554 PANTHER - 10 455 - -
Lan17g0065 554 MobiDBLite consensus disorder prediction 531 554 - -
Lan17g0065 554 ProSiteProfiles Zinc finger RING-type profile. 301 339 IPR001841 -
Lan17g0065 554 Coils Coil 506 533 - -
Lan17g0065 554 SMART ring_2 301 338 IPR001841 -
Lan17g0065 554 PANTHER RING ZINC FINGER PROTEIN 10 455 - -
Lan17g0065 554 Pfam Ring finger domain 300 339 IPR001841 -
Lan17g0065 554 SUPERFAMILY RING/U-box 281 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0065 Lan-Chr17 355895 361351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0065 10 542 C3H Transcription Factor Family AT3G16090 63.265 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0065 K10601 - gmx:100816441 818.92