Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0063 ATGGGAACTCGACCTCACCAACCAAGTCGAGAGGAAGACGAGGAGGAGCTTCTAGGTCATGGAACAACGATTTCAGGTCAATCCATGTCAACGAGCATAAGTGTCGGGTCTCCATCCAGCCGGAGTGAGCAAACAATGGCAACACCAGTTAGTGAAAACACTTTTCTTAGATTGAACCATCTTGACATACATGGAGATGATGCTGCATCACAGGGAACGGTTGCCAAGAAGAAAAGGAGAGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTGGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTCGTGGCAGAATTTTCTGATCCAAGCAGTGGTGTTTCAACCCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTCTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACCAGTGTGAACGATATTGAAGGACTAAAGGCAGACCGTCTTGCGCTGAGGAATAGAAATGAACAGAAAAGGGCCTATTTGCAAGAGCTGAAGGAGCAATTGGTAGGTCTTGAGAACCTTGTACAACGAAATGAGCAACTATATAGCTCTGGAAATGCTCCCAATGGAGGTGTATCTTTGCCTTTTATTCTAGTGCAGACACGCCCTCATGCAACTGTTGAAGTGGAAATTTCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACACCTTTCGAACTGCATGATGACAACTATGTCCTCAAGGAAATGAAATTTTGCAAGAGACCTCAGAATGATACTCTGACACTTAATCTTACCGACGGAGGTGAAAGCTCTAACATGTCAGGTGGCTTTTATGATGCTCAAGTTCCTACTATTGTTTCGAACCCACCAGTTAGGCCTCCCTCATCACCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAATGAGCACTGA 1029 0.4412 MGTRPHQPSREEDEEELLGHGTTISGQSMSTSISVGSPSSRSEQTMATPVSENTFLRLNHLDIHGDDAASQGTVAKKKRRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSSGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEGLKADRLALRNRNEQKRAYLQELKEQLVGLENLVQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKEMKFCKRPQNDTLTLNLTDGGESSNMSGGFYDAQVPTIVSNPPVRPPSSPPLPGILKARVKNEH* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0063 342 PIRSF Txn_factor_DP 3 342 IPR015648 GO:0005667|GO:0051726
Lan17g0063 342 MobiDBLite consensus disorder prediction 21 45 - -
Lan17g0063 342 Coils Coil 188 222 - -
Lan17g0063 342 SUPERFAMILY E2F-DP heterodimerization region 179 293 IPR037241 -
Lan17g0063 342 Pfam Transcription factor DP 180 303 IPR014889 -
Lan17g0063 342 PANTHER TRANSCRIPTION FACTOR DP 21 342 - -
Lan17g0063 342 MobiDBLite consensus disorder prediction 68 92 - -
Lan17g0063 342 CDD DP_DD 177 280 IPR014889 -
Lan17g0063 342 SUPERFAMILY "Winged helix" DNA-binding domain 92 173 IPR036390 -
Lan17g0063 342 SMART E2F_TDP_2 89 172 IPR003316 GO:0005667|GO:0006355
Lan17g0063 342 Gene3D Transcription factor DP 178 298 IPR038168 -
Lan17g0063 342 MobiDBLite consensus disorder prediction 1 45 - -
Lan17g0063 342 MobiDBLite consensus disorder prediction 1 19 - -
Lan17g0063 342 Pfam E2F/DP family winged-helix DNA-binding domain 92 172 IPR003316 GO:0005667|GO:0006355
Lan17g0063 342 Gene3D - 85 177 IPR036388 -
Lan17g0063 342 SMART DP_2 179 340 IPR014889 -
Lan17g0063 342 PANTHER TRANSCRIPTION FACTOR DP 21 342 IPR015648 GO:0005667|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0063 Lan-Chr17 342481 347993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0063 90 288 E2F-DP Transcription Factor Family AT5G02470 55.000 6.48e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lan17g0063 DP 3.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0063 K04683 - gmx:100797603 569.311