Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0055 ATGATGAGAAGAACAACAAACAGTGATGAAAGTGGTTTGAAGAAGGGTCCATGGACACCAGAAGAGGATAAAATATTAGTGGAATACATTGAGAGACATGGACATGGAAGTTGGAGAGCACTTCCAAAGGTTGCAGGGTTGAATAGATGTGGAAAGAGTTGTAGGTTAAGATGGAGTAATTATCTAAGGCCTGATATCAAAAGAGGAAATTTCTCTGATCAAGAACAACACCTTATCATCAATTTACATGCACTTCTTGGCAATAAGTGGGCAGCTATATCGAGTCATCTACCAGGAAGAACCGATAATGAAATTAAAAACTTTTGGAACACACATTTAAAGAAAAAACTTATACAAATGGGGTTAGACCCGGTTACTCATCGTCCAAGATCAGATCACCAAAATCTTCTTACCAACTTACAACAAATTCTTGAAGCTGCAAATATTCTCAGTAATTTTACAAACCCTAGTGATAATACTAATAATGCTTTAAGACTACTACACTCAGATGCAACACAAGTAGCTAAACTCCACTTGCTACACAATATTCTTCAAGTCATTGGACCCATTCCAGCTTCTACAAATTTAGAGTCATCACTTCATTATCTTGATGTGTTAGGATTGAACAATCACTCTAACATGCAAAACCTATGCAATCATACTTCAAATGGTTTTTCTTGTGAAAATCAATTACCCAACTTGCATAACATTGAAGCACTTCATCAACACTTGAATGTAGGGAGAAATATTAGTTGCATTTGTGAGTCTAAAAAGTTTGGTGAACAACTTGGTTCCACAAATGTTAATGTTGTTCCAACACAATCATCAAACTCAGTAGTACTACTTCAAAACCTGGTTTCAACCTCACCTGAAGAACCTGGTTGTTCAACAGTAAAACAAGATGAAAATCCAACAAACACTTTTGAAATGTGGAGTGATTTCATGGATGAAGAAGCAAGTGATGTTTATTGGAAAGATTTCATTGAGTAA 990 0.3566 MMRRTTNSDESGLKKGPWTPEEDKILVEYIERHGHGSWRALPKVAGLNRCGKSCRLRWSNYLRPDIKRGNFSDQEQHLIINLHALLGNKWAAISSHLPGRTDNEIKNFWNTHLKKKLIQMGLDPVTHRPRSDHQNLLTNLQQILEAANILSNFTNPSDNTNNALRLLHSDATQVAKLHLLHNILQVIGPIPASTNLESSLHYLDVLGLNNHSNMQNLCNHTSNGFSCENQLPNLHNIEALHQHLNVGRNISCICESKKFGEQLGSTNVNVVPTQSSNSVVLLQNLVSTSPEEPGCSTVKQDENPTNTFEMWSDFMDEEASDVYWKDFIE* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0055 329 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan17g0055 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lan17g0055 329 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Lan17g0055 329 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lan17g0055 329 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Lan17g0055 329 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lan17g0055 329 Gene3D - 70 117 - -
Lan17g0055 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan17g0055 329 PANTHER MYB TRANSCRIPTION FACTOR 4 329 - -
Lan17g0055 329 CDD SANT 70 113 IPR001005 -
Lan17g0055 329 SMART sant 67 115 IPR001005 -
Lan17g0055 329 SMART sant 14 64 IPR001005 -
Lan17g0055 329 CDD SANT 17 62 IPR001005 -
Lan17g0055 329 Gene3D - 14 67 - -
Lan17g0055 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0055 Lan-Chr17 289259 290341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0055 2 329 MYB Transcription Factor Family AT3G02940 47.324 1.12e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan17g0055 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0055 K09422 - gmx:547488 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0055 17 289259 290341 Lan6g0049 6 319684 320782 LSH