Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0028 ATGGAAATGGGAACGAGATCAGGTGGCCCTTCTGGGGTTCTGGTGAAGAAGAAGAACGCCTCCGGTTGTTTAATTGTTCGAAAGAAAGGGAATGATGGAGTGGATGGTGCTGCTACTACTACTGCTGCTGTTGCTATTGGTTCATCTTCCACTTCTCGTAAGTTCCATGAAAGGCCTCGCAGCATGCCTTTCAATGATTCCGGATCCAGTGGTGAGTTACTGATGCCTCATGGTAATAAAAGGGTAGGCTCTGAGACTGTTCGAGTCTGTAATGGTTTGACTCCATTTGAACGTGGTATGGCACCGGGGAGTGAATTTGGTAGGAAGAGGGGTAATGGCGAAGCTCTGATTGCGGAGAATGGTTTGGACATGAGAGAAATGAAGCGCAGTAAGTTGGATGTGTGTAATTTCAGTGAGTATGATGCTACGGATTCAGGGAAAGTGAGGAGGAGACATGTTGATGATAACAGAGTTGGGTTTGGAGGGGGAAAGTTTATGGGGTCGATGCATGTTGCTAGGGATTTTGGAACAGGTTCAAGCAGAGACTTTCTTGATAAGATACGGAACTCCTACTATGACAGGCCAAGTGACTTGTATCTGGGGGATAGCATTGATCACAACAGGTCAAAGATGAACAGGGATGGAACTCCGCTTCCTCCAACCTTGTCGAAGGAGAAGTTTAATTCACGTGAATTCATTAGGATTCAAGGTAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAGGAAGATGGGTGGGCCATCAGAACACCATGATCATCATAAACCTGTGGAAAGCATGCAAAAGTTGAGGTCTGAGGGATTTGCCAATAAGAATGTTCTGAATCACCCTTCGTCATATATTGAAACAAAACTTACTCAGGAACCAGGTTTGCACATTAGGCCAGAGAGGAAACAGATAGCATCAAGAAAATCTTTGTCCAGCAAGGATAGTAAGGGTGATGAGTGGGATTCAGATGATGGTGACACATCACTGAATCCAGTAATAAAAAATACTGAAGTTTGCAAGTCTGAGAAGAAGATAATATCTGAGAATAAAAAAACCATTACTGGAGATTGCAAGTCTAAGAAGATAATCTCTGAAGATGAACAGACTCCTATGCATGAAAAGCTTCAGACTTCAGGAATTAAAGAAGGACAAATCAAGCGTGGTAGTGGCACAGAAAAACAAAAACTGCGAGAACGAATTAGGGAGATGTTGCTGAATGCAGGTTGGACCATAGACTATCGGCCTCGAAGGAATAGAGACTATCTTGATGCAGTTTACATTAATCAAGCAGGTACTGCCTACTGGTCTATCATCAAGGCCTATGAAGCATTTCAAAAGCAATTGAATGATAACGTTGTTGAGGCCAAGCCCAAAGGAGAAAGTTCTTCCTTTGCTCCTATAGCAGATGATGTGCTTAGTCAATTGACAAGGAAAACTAGGAAAAAAATGGAGATAGAATTAAAGAAGAATAATAAGAAGAAAAGACATGATAATGAAATTGACAGTAGAAAAGAGCCTTGCATTAAAAGATGTTCCAGCAACAAGCATGATAAGAATGGCATGGATGGTGATAGCAACGAAGATAAGTTAAGCTCCTTTATGAAGCAGGGAAGTAAGCAATTGAAAAATAAGATGATTGCAAATACCACTGCCAATGCTAGCTGTAAAAGCCAGAACACAACCGACCACTCAAATGATGAAAAAGAAAACTCATATTTAGGACGTGATCCTCATCTTATACATGGAAGGAAGAGCGGAAAGTATGGAAGATGCACACTGTTAGTTCGTAATTCTAACAAGGGATTACATTCAGAATCTGATGGTTTTGTCCCACATACAGGCAAACAGACAGTGCTTTCTTGGTTGATTGATTGTGGGACAGTTGTGTTAAGCCAAAAGGTTCAGTACCGTAGACGGAAGAAGGTAGTGTTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAGTTGTCCCACCCATATCAAAACATATACTTGGAATCTGGAGTATCTCTTCTACAATGCCAGATAGATGCATGGAACAGACAAGAGACTTCTGAAAAAATTGGTTTCCATTCAGTGGATATGAATGGTGATGATCCACATGATGATACTTGTGGCATATGTGGAGATGGAGGGGATTTAATCTGTTGCGATAGGTGTCCATCAACATTTCATCAGAGCTGCTTGAATATACAGATACTTCCTCCTGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGGGTTGCTAGTGGAACTTCTAAGAATGATGATGCAACTCTGTATGCTCTACGTACTTGCAACTCATGTGACAAAAAATATCATGACTCTTGCACCAAGGAGTTGGATGTCCTTCGTAATGACTCCAATACATCAGACCCTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACACTGGTTTCAAGCATGAACTAGAAGCAGGCTTTTCATGGTCTCTTATTCATAGAACAGATGAAGACTCAGAGGCAGCTAATATGGGAATTGCCCATAGGGTTGAATGCAATTCCAAGCTAGCTATTGCACTGACTGTGATGGACGAATGCTTTTCCCCTGTTGTTGATCGGAGGAGTGGGATCAATATGATTCGTAATGTTTTATACAATAGTGGGTCAAACATCAGTCGCTTGAGTTACTGTGGCTTTTACACTGCTATTTTGGAGCGAGGAGATGATATCATTTCTGTAGCATCTCTCAGGTTCCATGGGACTAAGTTAGTAGAGATGCCATTCATTGGAACTCGCTATATATATAGGCGCCAGGGGATGTGCCGCCGGCTTTTTTCTGCCATTGAATCGGCTCTGTGCTCTTTGAAGGTTGAGAATCTGGTTATTCCTGCAATTGCTGAACTCATGCATACGTGGACAACAAATTTTGGCTTTACACATCTCGAGGAATCACTGAGGCATGAAATGAGGTCATTGAAGATGCTGGTTTTCCCTGGTATAGATATGCTACAGAAGCTATTAGTGGAGCAAGGAAAACATGAGGGCAATACAACCGCTGGAGGTTCGTCAGCTATGCAAGATCTTAATGGAAGTGATGATGCCAGTTCAGGTTCTGCCAATGAGATGAATGATGAACTTAGTGGTGCTTCTGAAGAACCGAACGATCAAGGTTCAGTAGACAGGACTTCTTCTTCCAAATCTCGTTCTGCGGAAAGGTTATCTGATGATTCAGTTTCAGATAGATGTGCTACTCCTAGTACTAGTCACAGTGCACCAGGCTTGAAAACTGGAATACCAATGGCTCCACCTGTTGTTGATGAATTGAATCCTTCTCCGAAATGTCAAGGTGTTTCATTGAAAGACAATTCTGTAAACAGTCACCCCTTGGATGTTCCGGATTGCAACAAAATTCCAACTCCGGTTCAGGAAGGTGCTTGTCCTGATCCTTGTTCAGCAGAAAAGCTTAACAGGAAATGTCACCCATTTGCTGCTATGAATCCTGATTCATCCGAGCTTGACATTAATCCGGTGTTGGATTCTGAAGTGGTGGACAATACTCTCTCTTCTAAAGAGGTTCATTTATCAGATGAGAACATTACAAAGTAG 3663 0.4196 MEMGTRSGGPSGVLVKKKNASGCLIVRKKGNDGVDGAATTTAAVAIGSSSTSRKFHERPRSMPFNDSGSSGELLMPHGNKRVGSETVRVCNGLTPFERGMAPGSEFGRKRGNGEALIAENGLDMREMKRSKLDVCNFSEYDATDSGKVRRRHVDDNRVGFGGGKFMGSMHVARDFGTGSSRDFLDKIRNSYYDRPSDLYLGDSIDHNRSKMNRDGTPLPPTLSKEKFNSREFIRIQGKNGVLKVMVNKRKMGGPSEHHDHHKPVESMQKLRSEGFANKNVLNHPSSYIETKLTQEPGLHIRPERKQIASRKSLSSKDSKGDEWDSDDGDTSLNPVIKNTEVCKSEKKIISENKKTITGDCKSKKIISEDEQTPMHEKLQTSGIKEGQIKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINQAGTAYWSIIKAYEAFQKQLNDNVVEAKPKGESSSFAPIADDVLSQLTRKTRKKMEIELKKNNKKKRHDNEIDSRKEPCIKRCSSNKHDKNGMDGDSNEDKLSSFMKQGSKQLKNKMIANTTANASCKSQNTTDHSNDEKENSYLGRDPHLIHGRKSGKYGRCTLLVRNSNKGLHSESDGFVPHTGKQTVLSWLIDCGTVVLSQKVQYRRRKKVVLEGWITRDGIHCGCCSKILTVSKFELHAGSKLSHPYQNIYLESGVSLLQCQIDAWNRQETSEKIGFHSVDMNGDDPHDDTCGICGDGGDLICCDRCPSTFHQSCLNIQILPPGEWHCPNCTCKFCGVASGTSKNDDATLYALRTCNSCDKKYHDSCTKELDVLRNDSNTSDPSFCGKECKELFEHLKKYTGFKHELEAGFSWSLIHRTDEDSEAANMGIAHRVECNSKLAIALTVMDECFSPVVDRRSGINMIRNVLYNSGSNISRLSYCGFYTAILERGDDIISVASLRFHGTKLVEMPFIGTRYIYRRQGMCRRLFSAIESALCSLKVENLVIPAIAELMHTWTTNFGFTHLEESLRHEMRSLKMLVFPGIDMLQKLLVEQGKHEGNTTAGGSSAMQDLNGSDDASSGSANEMNDELSGASEEPNDQGSVDRTSSSKSRSAERLSDDSVSDRCATPSTSHSAPGLKTGIPMAPPVVDELNPSPKCQGVSLKDNSVNSHPLDVPDCNKIPTPVQEGACPDPCSAEKLNRKCHPFAAMNPDSSELDINPVLDSEVVDNTLSSKEVHLSDENITK* 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0028 1220 MobiDBLite consensus disorder prediction 296 326 - -
Lan17g0028 1220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 714 787 IPR013083 -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 1098 1112 - -
Lan17g0028 1220 SMART PHD_3 726 767 IPR001965 -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 491 532 - -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 372 395 - -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 1032 1123 - -
Lan17g0028 1220 SUPERFAMILY FYVE/PHD zinc finger 712 769 IPR011011 -
Lan17g0028 1220 Pfam Tify domain binding domain 649 699 IPR032308 -
Lan17g0028 1220 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1155 - -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 293 333 - -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 49 71 - -
Lan17g0028 1220 ProSiteProfiles Zinc finger PHD-type profile. 724 769 IPR019787 -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 553 584 - -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 564 584 - -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 491 534 - -
Lan17g0028 1220 ProSitePatterns Zinc finger PHD-type signature. 727 766 IPR019786 -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 1034 1083 - -
Lan17g0028 1220 CDD PHD2_CHD_II 727 766 - -
Lan17g0028 1220 PANTHER PHD FINGER FAMILY PROTEIN 1 1155 - -
Lan17g0028 1220 Pfam PHD-finger 727 769 IPR019787 -
Lan17g0028 1220 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0028 Lan-Chr17 154135 160705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0028 4 1027 PHD Transcription Factor Family AT4G14920 47.493 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan17g0028 TDBD 4.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0028 - - gmx:102666194 1550.03