Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0016 ATGGAGATGGGAATGGGTATGGGAATGAGGATGTTTGGAATTAACATTCTAACACTCTCCTTTCTTCTCCTTATGCTTATTCTCATCCTCATTTTCTTCTTCTTCTTCTTCTCATTCCTTTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCAACCATTCTTCCTCCATCCTCAAGGGTGAGCTAGAGAAACCTCTTGTTGGTGACCATCATCTTCATGAAGATGATGATGTAATTGAATTGAATAGAGACTATGATCTTGAGGGTGCTTGTTATCCAAATGAACCTCATTTTCATGGTCTTGTTCATAAGCAAAGGATTCCTCCACTTTCTATTCATCTTAATCATTTCCCACAACAACAACAACAACAACAACAACAACAACAACCTCAACTCGCTGTTCCTGATACTATTGTTTTAGATGTTCTTTCTCAACATGATGATCTTCTTGGACATACACTTAAGGCGCTGCATCATGGAGATGGACAACCCACACCCACTTTTCATAATCATACACCATTGCACCACTTTCCTCAAACAGAAACCTCCCATCAAAGAAGTTGCCTCACTCTAGAGGTTATCAGCGGTCCTTCTTGCGGACTTCATTGTTCTGTACAGTCAACAAATCCCTCTCGGCTACCGCTGACCTTGGGGAGAATTTCTCCTACTGATTTATTGATAAAGGATTCAGAAGTCTCAGGAAAGCATGCTTTAATAAAGTGGAATTTGGATAAAATGAAATGGGAGTTGGTGGATATGGGTAGCCTAAATGGAACCCTTTTGAATTCTCAGCCAATCAATCATCCAGATACTGGAAGTAGGAATTGGGGAGATCCAATAATTCTTGCCAATGGAGATGTCATAACACTTGGAACAACATCAAAAGTAATGGTTCATATTACTTCAGAAAATCATCACTGCATTCCCTTCGGAGTTGGTATGGCATCAGATCCCATGGCTATGCGTCGAGGAGGAAAAAAGCTTCCCATGGAAGATGTTTGCTATTATCAATGGCCTCTACCTGGGCTAGATCAGTTTGGAATTTTTGGAATTTGTGATGGGCATGGTGGAGATGGAGCTGCTAAATCTGCTAGCAAACTTTTTCCTGAGATTGTTGCGAGTATTTTATCGGATCCATTAAAAAGGGAGAGGGTTTTATCACTCTGTGATGCTTCAGACATTCTTCAAGATGCATTTTCTCAAACAGAAGCATGCATGAATCACTATTATGAGGGATGTACAGCAACTGTGCTTCTGGTTTGGGCTGACGGTCATCAAAATTTCTTTGCACAATGTGCAAATGTTGGAGACTCTGCCTGTATCATGAGTGTTAACGGGAAACAAATAAAGTTAACAGAAGATCACAAGATAACGGATTATTCAGAAAGAGTGAGGATTGAAGAGAGAGGAGATCCATTGAAGGAAGGGGAAACACGTCTATATGGTATAAACCTTGGAAGGATGCTTGGGGACAAATTCCTGAAACAACAGGATTCACGGTTCAGTTCAGAACCTTATATAAGTCAAGTCCTCCATATCCATCAAGCAAACAGGGCTTTCGCTCTTCTAGCTAGTGATGGGTTATGGGATGTCATCAGCATCAAGAAGGCATTTCAGCTAGTGCTTCAGATGAGGGAGAGATACTGTACAGAAAGAGAAGATTCAGCTGAAAAGATTGCTAGTTTCTTATTGAGTGAGGCTAAAACACTCAGAACAAAGGATAATACCTCTGTAATTTTCTTAGATTTTGATACCTTGAACAGATTTTCATGTAAAGTTGAACCCTAG 1788 0.4021 MEMGMGMGMRMFGINILTLSFLLLMLILILIFFFFFFSFLFFLFKPWRFFFNHSSSILKGELEKPLVGDHHLHEDDDVIELNRDYDLEGACYPNEPHFHGLVHKQRIPPLSIHLNHFPQQQQQQQQQQQPQLAVPDTIVLDVLSQHDDLLGHTLKALHHGDGQPTPTFHNHTPLHHFPQTETSHQRSCLTLEVISGPSCGLHCSVQSTNPSRLPLTLGRISPTDLLIKDSEVSGKHALIKWNLDKMKWELVDMGSLNGTLLNSQPINHPDTGSRNWGDPIILANGDVITLGTTSKVMVHITSENHHCIPFGVGMASDPMAMRRGGKKLPMEDVCYYQWPLPGLDQFGIFGICDGHGGDGAAKSASKLFPEIVASILSDPLKRERVLSLCDASDILQDAFSQTEACMNHYYEGCTATVLLVWADGHQNFFAQCANVGDSACIMSVNGKQIKLTEDHKITDYSERVRIEERGDPLKEGETRLYGINLGRMLGDKFLKQQDSRFSSEPYISQVLHIHQANRAFALLASDGLWDVISIKKAFQLVLQMRERYCTEREDSAEKIASFLLSEAKTLRTKDNTSVIFLDFDTLNRFSCKVEP* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0016 595 Gene3D - 183 318 - -
Lan17g0016 595 ProSiteProfiles PPM-type phosphatase domain profile. 311 583 IPR001932 -
Lan17g0016 595 ProSitePatterns PPM-type phosphatase domain signature. 348 356 IPR000222 GO:0043169
Lan17g0016 595 SUPERFAMILY PP2C-like 324 585 IPR036457 -
Lan17g0016 595 Pfam Protein phosphatase 2C 319 576 IPR001932 -
Lan17g0016 595 CDD FHA 189 297 IPR000253 GO:0005515
Lan17g0016 595 SUPERFAMILY SMAD/FHA domain 187 298 IPR008984 GO:0005515
Lan17g0016 595 Pfam FHA domain 216 291 IPR000253 GO:0005515
Lan17g0016 595 CDD PP2Cc 319 583 IPR001932 -
Lan17g0016 595 ProSiteProfiles Forkhead-associated (FHA) domain profile. 215 266 IPR000253 GO:0005515
Lan17g0016 595 SMART FHA_2 214 266 IPR000253 GO:0005515
Lan17g0016 595 SMART PP2C_4 305 581 IPR001932 -
Lan17g0016 595 PANTHER PROTEIN PHOSPHATASE 2C 70 48 594 - -
Lan17g0016 595 Gene3D - 319 591 IPR036457 -
Lan17g0016 595 PANTHER PROTEIN PHOSPHATASE 2C 48 594 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0016 Lan-Chr17 93258 97723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0016 9 585 PP2C-type Phosphatase Gene Family AT5G19280 51.136 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0016 K01090 - gmx:100170642 795.038