Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0011 ATGTTGAACACAACCGTGTTATATTCATCTCACAATCACGACATGTTTGATTTGACTTCATCCCACAAAATTTCATCTGAGAATGATTATGAGACATCATTGATGGATTACGGGGAGGCCGATCCTGAGGGTAGTGAGGACCAAGATCCCAACCCACGACCCAAAAAGAAGGGCTTCCACCGCCACACACAGCTGCAAATACAAGAAATGGAAGCGTTCTTCAAGCAGTGTCCTCACCCAGACGACAAGCAAAGAAAAGAGCTTAGCCATGAGCTTGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAAATCAAGGCTCAACATGAACGCCATGAAAATGCTATTCTGAAGGCTGAGAATGAAAAACTTCGTGCTGAGAACATTAGGTACAAGGAGGCCCTAAGTAATGCTACATGCCCTAACTGTGGAGGCCCAGCTACTATCGGTGAAATGTCTTTTGATGAACAGCACTTAAGAATTGAGAATGCTCGACTAAGAGAAGAGATTGATAGGCTTTCAGGAATTGTGGGTAAATATATCGGAAAGCCGGTGACATCTTACTCCAACCTCTCATCTCACAATAATAATAATAATAATAATCACTTTCTTGATCTTGGAGTTGGTAACTATGGAGCACAGTCATCAACCGGCATGGTTGGAGAAATTTATGGCGGTAGTAGTAGTGACCTTTTTAGGTCACTTCCAGTTCCTGCCGATGCTGACAAACCAATGATTGTGGAGCTTGCTGTTGCAGCAATGGAGGAACTTACCAGATTAGCTCAGGCTACACACCCTTTATGGGTCCCCAATGATTACCTTACTGAGATTCTCAACGAAAAAGAATACTTGAGAACATTCCCTAGAGGTATAGGTCCCAAACCCTTGGGCTTAAGATCTGAAGCTTCAAGGGAATCTGCTGTCGTTATCATGAACCATACTAACCTTGTTGAGATCCTTATGGATGTGAACCAATGGTCAAATGTGTTTTGCGGTATTGTGTCAAGAGCGTTGACACATGAAGTCCTTTCAACAGGAGTGGCAGGAAACTACAATGGAGCCCTGCAAGTGATGTCAGCTGAGTTCCAAGTCCCATCACCACTTGTTCCTACTCGTGAGAACTATTTTGTAAGGTACTGTAAAAAACATCAAGATGGAACATGGGTAATTGTTGATGTTTCATTGGATAATCTACGACCTAGTATAGTGTCAAGAAGTCGGAGAAGGCCCTCTGGTTGTGTTATTCAAGAATTGCCAAATGGTTATTCCAAGGTTATATGGATTGAACATGTAGAAGTGGATGATAGAGTGGTGCATAGTATATATAAACCTCTAGTTGATTCCGGGATTGCATTTGGAGCTAAAAGGTGGGTGGCCACATTAGATCGACAATGCGAACGTCTTGCTAGTTCCATGGCCAGCAACATATCAGCAGGGGACCTTTCTGTGATAACAAGTCCTGAAGGAAGGAAAAGTATGTTGAACTTGGCAGAAAGAATGGTAATGAGCTTTTGCACTGGTGTTGGTGCATCAACCTCACATGCTTGGACAACCCTATCTGCAACTGGATGTGATGATGTAAGAGTCATGACCAGAAAGAGTATGGATGACCCTGGCAGACCCCCTGGTATAGTGCTTAGTGCTGCAACTTCTTTTTGGCTTTCTGTTCCTCCAAAGACGGTTTTTGATTTCCTCAGAGATGAAAACTCAAGAAGAGAGTGGGATATTCTCTCCAACGGAGGTCAAGTTCAAGAAATGGCACACATTGCAAATGGTCATGATCCTGGCAACTGTGTCTCTTTACTTCGTGTCAATAGTGTAAATTCGAACCAAAGCAACATGCTGATACTTCAAGAGTGTTGCACTGATTCCAGTGGGTCATATGTAGTTTATGCTCCTGTTGATATTGTTGCGATGAATGTAGTGTTGAGTGGGGGAGATCCAGATTATGTTGCACTGTTACCCTCAGGTTTTGCTATTCTTCCTGATGGGCCTGGATTGAATAATGGAGGAGGAATAGTTGATGTTGGTTCAGGTGGTTCTCTTCTCACAGTTGCATTTCAGATATTAGTTGATTCAGCCCCAACAGCAAAACTATCTCTAGCTTCAGTGGCAACTGTCAACAGTTTAATTAAGTGCACAGTTGAAAGGATCAAAGCTGCACTCATATCTCACAATACCTAA 2199 0.4293 MLNTTVLYSSHNHDMFDLTSSHKISSENDYETSLMDYGEADPEGSEDQDPNPRPKKKGFHRHTQLQIQEMEAFFKQCPHPDDKQRKELSHELGLEPLQVKFWFQNKRTQIKAQHERHENAILKAENEKLRAENIRYKEALSNATCPNCGGPATIGEMSFDEQHLRIENARLREEIDRLSGIVGKYIGKPVTSYSNLSSHNNNNNNNHFLDLGVGNYGAQSSTGMVGEIYGGSSSDLFRSLPVPADADKPMIVELAVAAMEELTRLAQATHPLWVPNDYLTEILNEKEYLRTFPRGIGPKPLGLRSEASRESAVVIMNHTNLVEILMDVNQWSNVFCGIVSRALTHEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKKHQDGTWVIVDVSLDNLRPSIVSRSRRRPSGCVIQELPNGYSKVIWIEHVEVDDRVVHSIYKPLVDSGIAFGAKRWVATLDRQCERLASSMASNISAGDLSVITSPEGRKSMLNLAERMVMSFCTGVGASTSHAWTTLSATGCDDVRVMTRKSMDDPGRPPGIVLSAATSFWLSVPPKTVFDFLRDENSRREWDILSNGGQVQEMAHIANGHDPGNCVSLLRVNSVNSNQSNMLILQECCTDSSGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPGLNNGGGIVDVGSGGSLLTVAFQILVDSAPTAKLSLASVATVNSLIKCTVERIKAALISHNT* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0011 732 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 21 729 - -
Lan17g0011 732 SUPERFAMILY Homeodomain-like 40 113 IPR009057 -
Lan17g0011 732 Gene3D - 322 471 IPR023393 -
Lan17g0011 732 Gene3D - 42 129 - -
Lan17g0011 732 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Lan17g0011 732 MobiDBLite consensus disorder prediction 35 61 - -
Lan17g0011 732 SMART HOX_1 54 117 IPR001356 GO:0003677
Lan17g0011 732 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 729 IPR042160 -
Lan17g0011 732 SUPERFAMILY Bet v1-like 492 724 - -
Lan17g0011 732 Coils Coil 107 142 - -
Lan17g0011 732 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Lan17g0011 732 Pfam START domain 254 472 IPR002913 GO:0008289
Lan17g0011 732 SUPERFAMILY Bet v1-like 245 474 - -
Lan17g0011 732 SMART START_1 253 472 IPR002913 GO:0008289
Lan17g0011 732 CDD homeodomain 56 114 IPR001356 GO:0003677
Lan17g0011 732 Pfam Homeodomain 61 111 IPR001356 GO:0003677
Lan17g0011 732 CDD START_ArGLABRA2_like 248 471 - -
Lan17g0011 732 ProSiteProfiles START domain profile. 244 475 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0011 Lan-Chr17 70966 77520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0011 7 727 Homeobox Transcription Factor Family AT4G21750 75.429 0.0 1133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan17g0011 START 4.7e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0011 K09338 - gmx:100815499 1130.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0011 17 70966 77520 Lan4g1541 4 24498880 24503418 PCT
Lan4g1541 4 24498880 24503418 Lan17g0011 17 70966 77520 PCT