Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0010 ATGCCTATCCAACAATCTCTACTAGACATGCCTAGTAAACCCCTTTCTAAAATCTTGTGGTTAATCCTCTCTATTGCTATTGTCTTATCCTCACTACTCCTTATTTCTTCTTATTTGATCAAACCCATCCCATTGTTCAATCCCTCATCATCTCTCAACATATGTGAATATGCTATTGACACAAAATCATGCTTAGCCCATGTCTCAGAAGTAACTCAAGTTCCAAACTTGGCCACCACCACACAGAGCTACAAACTCAAGTTGCTTCAATCCATTTTAAAAAGGACCACTTCATACATTCTCAAAGGAATGGACACAGCCAATGCTATCAAACTCAAAGGCAGTAATAGTCCCAAGGATGAAGCAGCTCTACATGACTGTGAAGAGCTCATGGATTTGTCCAATAGTAGAGTTAAGGACTCAATGGTGGCTCTAAGTAAAAGGACAATTGATTCAATGCAAGATGCACACTCATGGCTAAGTAGTGTGCTCACTAACCACGCAACTTGCTTGGATGGACTGGAGGGTTCAGCTAGGACCCTTATGGAAGCTGAGGTTAAGGACTTGATATCCAGATCAAGAACCTCTTTGGCTTTGCTTGTTGCTATTTTGCCTCCAAAACCAAAGGGAAAAGGAATGATTGATGAAGTAGTTAATGGGAGGTTTCCGTCATGGGTAAGAAGGAAGGATAGAAGGGTTTTGGAGTGTTCAGTTGGGGAGATTGAAGCTAATGTTGTAGTTGCTAAGGATGGGAGTGGTGAGTATGAGACAGTAGCTGAGGCTGTAGCATCTGTACCTGATAAAAGCAAGACAAGATATGTGATATATGTAAAGAATGGAACATACAATGAAAATGTTGAAATTAGTAGCAAGAAGAAGAATGTGATGTTAATTGGTGATGGTATGAATGCAACTATTATCACTGGAAGCTTGAATAATGTCGATGGCACTACCACCTTCAGGTCCGCCACTCTTGCTGCTGTTGGCGATGGGTTTATAGCCCAGGATATTTGGTTCCAAAACACAGCAGGCCCAGAGAAGCACCAGGCCGTGGCTCTCCGTGTCGGCGCAGACCAGTCAATCATAAATCGCTGCCGCATTGATGCATACCAAGACACTCTCTATGCCCACAGCAACAGGCAATTCTACCGTGACTCCTTCATAACCGGCACTGTTGACTTTATATTTGGGAATGCAGGCGTGGTGTTTCAAAATTGCAACTTACAGGCCCGAAAGCCCATGGATAACCAAAACAACATGGTCACGGCCCAAGGAAGAATAGATCCAAACCAAAACACTGGGACTTCAATTCAACAATGTCAGTTAACACCAAGCCCAGATCTTGAGCCCGTTGTTGGGTCCATAAAAAGTTACTTGGGGCGGCCTTGGAAGAATTTCTCTAGAACCGTTGTGATGCAATCATCCATTGACAACCATATTGACCCAGCAGGATGGGCCGAATGGGATGCACAACATAAGGATTATTTGGAAACATTGTATTATGGAGAGTACATGAACAATGGGCCAGGTGCTGGTTTGGGTCGGAGAGTGAATTGGTCTGGTTTCCATATCCTAGGTGCTGAAGATGCTAACAACTTCACAGTAAAAGAGCTCATACAGGGTGATGTTTGGTTAAAGAACACTGGGGTCACCTTCATTGAGGGGCTCTAG 1671 0.4351 MPIQQSLLDMPSKPLSKILWLILSIAIVLSSLLLISSYLIKPIPLFNPSSSLNICEYAIDTKSCLAHVSEVTQVPNLATTTQSYKLKLLQSILKRTTSYILKGMDTANAIKLKGSNSPKDEAALHDCEELMDLSNSRVKDSMVALSKRTIDSMQDAHSWLSSVLTNHATCLDGLEGSARTLMEAEVKDLISRSRTSLALLVAILPPKPKGKGMIDEVVNGRFPSWVRRKDRRVLECSVGEIEANVVVAKDGSGEYETVAEAVASVPDKSKTRYVIYVKNGTYNENVEISSKKKNVMLIGDGMNATIITGSLNNVDGTTTFRSATLAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSIINRCRIDAYQDTLYAHSNRQFYRDSFITGTVDFIFGNAGVVFQNCNLQARKPMDNQNNMVTAQGRIDPNQNTGTSIQQCQLTPSPDLEPVVGSIKSYLGRPWKNFSRTVVMQSSIDNHIDPAGWAEWDAQHKDYLETLYYGEYMNNGPGAGLGRRVNWSGFHILGAEDANNFTVKELIQGDVWLKNTGVTFIEGL* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0010 556 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Lan17g0010 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 203 IPR035513 -
Lan17g0010 556 PANTHER PECTINESTERASE 17 555 - -
Lan17g0010 556 Gene3D - 238 556 IPR012334 -
Lan17g0010 556 Pfam Pectinesterase 244 542 IPR000070 GO:0030599|GO:0042545
Lan17g0010 556 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Lan17g0010 556 SMART PMEI_2 47 199 IPR006501 GO:0004857
Lan17g0010 556 CDD PMEI-like_4 59 203 - -
Lan17g0010 556 SUPERFAMILY Pectin lyase-like 242 555 IPR011050 -
Lan17g0010 556 TIGRFAM PME_inhib: pectinesterase inhibitor domain 84 188 IPR006501 GO:0004857
Lan17g0010 556 Pfam Plant invertase/pectin methylesterase inhibitor 54 193 IPR006501 GO:0004857
Lan17g0010 556 PANTHER PECTINESTERASE 17 555 - -
Lan17g0010 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 199 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0010 Lan-Chr17 66280 68620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0010 5 556 Carbohydrate Esterase AT1G11580 52.931 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0010 K01051 - gmx:100815836 793.882