Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0009 ATGCAAAGAGTAGAAACTAACAATATGGCTACCCAACAATCTCTTCTAGACAAGCCTGGTAAATCTGTTTCCAAAACTTTGTTGTTAGTCCTCTCTGTAGCTACTATCTTAAGCTCTTCACTCTTTATTGCTTCTTATCTCATGAAACCCACCTCCTCCTACTTTAACCTATCCTCTCCTCACTATGCTTGTGAACATGCAATTGACAAAGCATCCTGCCTTGCTCATTGCTCTGAAGTAGCTCAAGCACAAGGCCAAAAACTCAATTTGCTCCAATCCATCTTAATCAAATCTACTTCAGACATGCACAAAGCCTTACATAACACCAACCATGTCAAACTCCGGATCAATAGTCCAAAGGAGCAAGCAGCTTTGGTTGATTGTGAGGAGTTGATGGACATGTCCATGAATAGAGTTTGGGACTCAATCATGGCTCTATCTAAAAATACAACTAGTTCAATACAAGATGCACACTCATGGCTAAGTAGTGTGCTCACTAACCATGCAACTTGCTTGGATGGACTAGAGGGTTCAGCTAGGTCCCTTATGGAAGCTGAGCTTGAGGACTTGATATCTAGATCTAGAACCTCTTTGGCCTTGCTTGTTGCTATTTTGCCTCCAAATCCAAATGGTGAAGGACTCATTGATGAACCACTCAATGGTGGCTTTCCCTCATGGGTAACAAGCAACGATAGGAGGCTTTTGGAGTCTTCAGTTGAGGCGATCACTGCCAATGTTGTGGTGGCTAAGGATGGTAGTGGTAAATTCAAGACAGTGGCAGAAGCAGTGGCATCGGCACCAGACAATGGTAAGACAAGGTATGTAATCTATGTGAAGAAAGGAACATACAAGGAGAATGTTGAAATTAGTGGGAAGAAGACGAATGTGATGTTGGTTGGTGATGGTATGGATGCAACTTTAATCACTGCCAGCTTGAATTTTGTGGATGGAACAACCACCTTCAAGAGTGCCACTGTTGCTGCTGTTGGTGACGGGTTTATAGCCCAAGACATTTGGTTCCAAAACACAGCCGGAGCAGCGAAGCACCAGGCGGTGGCTCTCCGTGTCGGTGCTGACCAATCCGTCATAAATCGGTGCCGCATTGACGCCTTCCAAGACACTCTCTACGCCCATTCGAATAGGCAGTTCTACCGTGACTCTGTCATCACAGGCACGGTTGACTTCATATTTGGAAATGCAGCCGTTGTATTCCAAAACTCAAAGCTTGTGGCCCGTAAGCCTCTGAGTAATCAGAAGAACATGGTGACAGCCCAAGGAAGAGAAGATCCAAACCAAAACACAGGAACTTCAATCCAAAAATGTGAAGTAACACCAAGTTCAGATCTTAAACCTGTTGTTGGGTCAATCAAAACATATTTGGGGCGACCATGGAAGAAGTACTCAAGAACAGTTGTTTTGCAATCTACAATAGATAGTCACGTTGATCCATCAGGATGGGCTGAATGGGATGCTGCCTCTAAAGACTTTTTGGACACATTATATTATGGAGAATACATGAACAGTGGTGCTGGTGCTGGTACTAGCAATAGAGTGAAATGGAAAGGGTATCATGTCATCAATAATGCTGCAGAGGCCAACAAGTTCACAGTTAAACAACTCATCCAAGGTGATGTTTGGTTGAAGAACACTGGAGTCACCTTTACTGAGGGTCTCTAG 1677 0.4389 MQRVETNNMATQQSLLDKPGKSVSKTLLLVLSVATILSSSLFIASYLMKPTSSYFNLSSPHYACEHAIDKASCLAHCSEVAQAQGQKLNLLQSILIKSTSDMHKALHNTNHVKLRINSPKEQAALVDCEELMDMSMNRVWDSIMALSKNTTSSIQDAHSWLSSVLTNHATCLDGLEGSARSLMEAELEDLISRSRTSLALLVAILPPNPNGEGLIDEPLNGGFPSWVTSNDRRLLESSVEAITANVVVAKDGSGKFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVEISGKKTNVMLVGDGMDATLITASLNFVDGTTTFKSATVAAVGDGFIAQDIWFQNTAGAAKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTVDFIFGNAAVVFQNSKLVARKPLSNQKNMVTAQGREDPNQNTGTSIQKCEVTPSSDLKPVVGSIKTYLGRPWKKYSRTVVLQSTIDSHVDPSGWAEWDAASKDFLDTLYYGEYMNSGAGAGTSNRVKWKGYHVINNAAEANKFTVKQLIQGDVWLKNTGVTFTEGL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0009 558 SMART PMEI_2 55 200 IPR006501 GO:0004857
Lan17g0009 558 ProSitePatterns Pectinesterase signature 1. 270 289 IPR018040 -
Lan17g0009 558 Pfam Pectinesterase 245 544 IPR000070 GO:0030599|GO:0042545
Lan17g0009 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 200 IPR035513 -
Lan17g0009 558 PANTHER PECTINESTERASE 37 556 - -
Lan17g0009 558 Gene3D - 239 558 IPR012334 -
Lan17g0009 558 CDD PMEI-like_4 66 204 - -
Lan17g0009 558 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Lan17g0009 558 SUPERFAMILY Pectin lyase-like 241 557 IPR011050 -
Lan17g0009 558 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 184 IPR006501 GO:0004857
Lan17g0009 558 Pfam Plant invertase/pectin methylesterase inhibitor 63 190 IPR006501 GO:0004857
Lan17g0009 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 204 IPR035513 -
Lan17g0009 558 PANTHER PECTINESTERASE 37 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0009 Lan-Chr17 50985 53315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0009 5 558 Carbohydrate Esterase AT1G11580 55.556 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0009 K01051 - gmx:100815836 835.099