Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1262 ATGATGGCAAAAACAAATAAAGGGGTATCATCACTATCTCATCATGATAATAATGATGCAACTGTTTCTGAATTGAAGGAAAAATTGCGAGGTTTGGTGAACATTATTGTTGAAAAGAAGAGTGATTATAACTACACTATTCAACAAACAACAACAGATGAAGCTATTGCTACACTTCAACTACTCAAACATTTTAATCAAAATTCTTCCTTTTCAAATAAATTAGATCAATTTCTTGTTCCTCCACTTTTTCGATGCCCCATTTCCACACAATTGATGACCGATCCTGTTATTTTGTCTACTGGACAGACTTATGATCGGCCATTCATACAGAGGTGGTTGAATGAAGGCCACAGAACATGTCCTCAAACTCAGCAAGTGCTCACTCACACTATCCTCACTCCTAATTACTTGGTCCGTGACATGATTGCGGAATGGTGTAGGGAGCGTGGAATTGAGCTACCAAAGCTTGTTCGAGATACCGATGAAGTAGTAACCAATGCAGACAGAGACCACTTAAATTTGTTGCTTCACAAGTTGTCATTGTCTGTTTCTGATCAGAAAGAAGCTGCGAAAGAGCTTCGGAAGTTAACAAAGCGAATGCCTTCGTTCCGTACACTTTTCTCTGGTGATGTAATTCCACAGTTGCTCAGTCCATTATCGACCAGAAATGCTCTTATCCACCCCGATCTCCATGAAGACTTGATCACAACGGTTCTGAATCTGTCAATTCATGATGATAATAAGAAAGTGTTTGGAGAAGATCCAAACGTCATTTCTCTGCTTATTGATGCATTGGAAACTGGAACCATTCAAACAAGGAGCAACGCTGCAGCCGCTATTTTCACATTATCAGCTCTTGATTCGAACAAACACATCATTGGAAAATCCGGAGTCATAAAACATTTGCTTGAGCTTTTAGATGAGGGAAATCCATTAGCCATGAAAGATGCTGCCTCAGCCATATTCAACCTATGTGTTGTGCATGAGAATAAAGGTAGGACTGTGAGAGATGGCGCAGTCCAGGTTATTCTGAAGAAGATCATGGACAACGTTCTTGTCGACGAGTTGTTAGCTATATTGGCACTCCTCTCAAGCCACCCCTTGGCTGTTGAAGAAATTGGCGACCTCGGTGCTGTCCCCTACTTGCTCGGTATTATAAGGGAGGCCGCCGCATCGGAAAGGAGCAAGGAAAATTGTGTTGCAATCTTATATACAGTCTGCTACAGTGATAGAACAAAGTGGAGGGAAATTAGAGAAGAAGAAAAAGCCAATGGTACATTGTCTAACCTTGCAAAATGTGGTACATCAAGGGCAAAAAGAAAGGCTAATGGGATTCTTGAGAGGCTTAATAGATCTATCTACTTAACACACACTGCTTAA 1383 0.4078 MMAKTNKGVSSLSHHDNNDATVSELKEKLRGLVNIIVEKKSDYNYTIQQTTTDEAIATLQLLKHFNQNSSFSNKLDQFLVPPLFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLTHTILTPNYLVRDMIAEWCRERGIELPKLVRDTDEVVTNADRDHLNLLLHKLSLSVSDQKEAAKELRKLTKRMPSFRTLFSGDVIPQLLSPLSTRNALIHPDLHEDLITTVLNLSIHDDNKKVFGEDPNVISLLIDALETGTIQTRSNAAAAIFTLSALDSNKHIIGKSGVIKHLLELLDEGNPLAMKDAASAIFNLCVVHENKGRTVRDGAVQVILKKIMDNVLVDELLAILALLSSHPLAVEEIGDLGAVPYLLGIIREAAASERSKENCVAILYTVCYSDRTKWREIREEEKANGTLSNLAKCGTSRAKRKANGILERLNRSIYLTHTA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1262 460 SUPERFAMILY ARM repeat 179 450 IPR016024 -
Lan16g1262 460 ProSiteProfiles U-box domain profile. 79 153 IPR003613 GO:0004842|GO:0016567
Lan16g1262 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 19 458 - -
Lan16g1262 460 Pfam Armadillo/beta-catenin-like repeat 290 326 IPR000225 GO:0005515
Lan16g1262 460 PANTHER U BOX DOMAIN-CONTAINING 19 458 - -
Lan16g1262 460 SUPERFAMILY RING/U-box 77 156 - -
Lan16g1262 460 SMART Ubox_2 83 146 IPR003613 GO:0004842|GO:0016567
Lan16g1262 460 SMART arm_5 367 409 IPR000225 GO:0005515
Lan16g1262 460 SMART arm_5 287 327 IPR000225 GO:0005515
Lan16g1262 460 SMART arm_5 245 286 IPR000225 GO:0005515
Lan16g1262 460 CDD RING-Ubox_PUB 84 126 IPR045210 -
Lan16g1262 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 152 IPR013083 -
Lan16g1262 460 Pfam U-box domain 80 150 IPR003613 GO:0004842|GO:0016567
Lan16g1262 460 Gene3D - 153 458 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1262 Lan-Chr16 20613380 20615537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1262 142 460 U-box Gene Family AT3G07360 58.788 5.72e-123 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1262 - - gmx:100806619 624.394