Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1248 ATGGAATCCACCACAACCACTACCACTAAGATCTACAATCTCTTCGTTAAACACTTAAACGGAAAAACCCTAACCCTAAAATTCAAATCCCCAATCCTCTCCTTCGATTCCATAAAGTCCCACCTTTTCCACCTCACCGGAATTCCACCGCACCACCAGCGTCTAATCACCGGAAACCGCCTCCTCTCCGACGAAGCAAACTCCACCATCTCATGCTCTCACAGCACCAACACCTTCCCCACCGTTCATCTCCTTCTCCGCCTCAATGGCGGAAAGGGAGGTTTCGGGTCACTCCTTCGTGGCGCCGCGACAAAAGCCGGGCAGAAAAAAACGAACAATTTTGATGCTTGTAGAGATATGAGTGGAAGAAGATTGAGACATGTGAATGCAGAGAAGAGGTTACAGGAATGGAAGGAATCAGAAGATGATAGGAAATTGGAGAAAGTGGCTGAAGAGTTTTTGAAGAAACAAATGAAGAAAGGAAAGAAGGGAAAAGGTGATGGAGAAGCACATAAGTATGTGGCTAAGTATAGAGAAGAGAGTGAAAGATGCACTGCTGACGTGGCGTTGTCGGTGAAAGAAGCTTTGATGAATGGTAATAATGGGAAGAGAAAGGGTGATGAAGGTGGTAAAGGTGATGCTAAGAAATTGAAGATATGGATGGGGAAGAGAAAAATGAATGAAAGTGACAGTGATTATTCCAGTGGAGAAGAGAATGACGATGAGGGGGAAAATGAGAAATCCATTTTATTGAATAGCCAGAATGAGTCAGACTCAAACAAGGATGATGGAAGTTCAGGTTCAGTGACTGGTCGGAAACAGGGTGTAGACTCTTCAGGTGCAAGCTCATGTGAAAGTGGGTCTGAAGAAGAGAAGGAAACTGTTGTAGAAGTCAAAGTGGAATCCGTTGAACCACACAGTAGCGATGCTGATCAGGTGAGTACTGTTGAGCCTGTGTTATCTGATGACACGGTGAAGCCTGTGGCTATGGTTTGTTCAGAGTTGGTAGTTTCTGAATTTAGTGCTGAAAATAATGGACATCAGGATTGCAATGGAGTGGTTTCTGACAAGCTTGATGGAGCACTAAGTCAAGCCTCGGATAATACAAGCTCAGAAAATGTGGCTGCTGCAACCAAATGTGTGGAAGTTGATCTTGAGAATAAGGCATCTGTAAATGAAGAAATCTCACCTAGCATTCCAACAATAGAGGAGTCTCTGAATTTTAGTGATTTTAGTTCAGCTGCAGAACTTGAGGTTCTTGGGTTGGAAAGGTTGAAGTCCGAACTGCAATCACGCGGATTAAAATGTGGAGGCACTTTACAGGAGCGTGCTGCCAGGCTTTTTCTTTTGAAATCCACCCCGCTCGATAAACTTCCAAAGAAGCTGCTTGCGAAGAAATGA 1401 0.4425 MESTTTTTTKIYNLFVKHLNGKTLTLKFKSPILSFDSIKSHLFHLTGIPPHHQRLITGNRLLSDEANSTISCSHSTNTFPTVHLLLRLNGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLQEWKESEDDRKLEKVAEEFLKKQMKKGKKGKGDGEAHKYVAKYREESERCTADVALSVKEALMNGNNGKRKGDEGGKGDAKKLKIWMGKRKMNESDSDYSSGEENDDEGENEKSILLNSQNESDSNKDDGSSGSVTGRKQGVDSSGASSCESGSEEEKETVVEVKVESVEPHSSDADQVSTVEPVLSDDTVKPVAMVCSELVVSEFSAENNGHQDCNGVVSDKLDGALSQASDNTSSENVAAATKCVEVDLENKASVNEEISPSIPTIEESLNFSDFSSAAELEVLGLERLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1248 466 MobiDBLite consensus disorder prediction 286 306 - -
Lan16g1248 466 ProSiteProfiles Ubiquitin domain profile. 12 91 IPR000626 GO:0005515
Lan16g1248 466 Pfam Silencing defective 2 N-terminal ubiquitin domain 12 157 IPR024974 -
Lan16g1248 466 MobiDBLite consensus disorder prediction 198 319 - -
Lan16g1248 466 MobiDBLite consensus disorder prediction 248 285 - -
Lan16g1248 466 Pfam Replication stress response SDE2 C-terminal 399 465 - -
Lan16g1248 466 PANTHER SPLICING FACTOR SF3A-RELATED 13 465 - -
Lan16g1248 466 Gene3D - 5 93 - -
Lan16g1248 466 SMART ubq_7 12 87 IPR000626 GO:0005515
Lan16g1248 466 MobiDBLite consensus disorder prediction 200 232 - -
Lan16g1248 466 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 13 465 - -
Lan16g1248 466 SUPERFAMILY Ubiquitin-like 11 92 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1248 Lan-Chr16 20494827 20497570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1248 399 465 C2H2 Transcription Factor Family AT5G06160 47.761 2.17e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1248 K25059 - gmx:100799364 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0368 2 3609519 3612522 Lan16g1248 16 20494827 20497570 LSH