Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1247 ATGGAAATCTTGAAACTCTTCTTTTACTTATGCATCATTCCTATCATATATGCCTCACATGATTGCCAAATTTCGTGGTGCGGCGACGACAATATCGTTATTCGATTCCCCTTTCAACTCGAAAGCGAGCAACAAGATCCTCATTGTGGCTACTCCGGCTTCGAATTACTTTGTAGTAATGATAGCAAAGCAATTCTAAAACTTCCTCACACAGAAAAATTCTATGTCAGAAACATAAACTATATCAGACAACAGATTCAACTATATGACCCTGATCATTGCCTTCCAAAACTTCTTCTAAGCCTTAATCTTTCAGGTTCACCATTCATCGCGATTTTTCGGAATAACTACACTTTCTTAAGCTGCTCATATCCTAACACAGATTCACAATTAGTTCCTATTGAATGTCTAAGCAATTCTACAAACTTTGTGTCTTCTATTCCTTCAGTTAACTTGACCAATTCATTGCTTGAGTCTTGCCATGTTATTCGGAATATTTCGGTTCCGGCTGCATGGCAAGGACTACTATATGAGGGAAATTTCAGAGATGATCTCAGTGAGGATCTTAGATTAACATGGTATGCACCTGATTGCACAGAATGTGAATCACAAGGGATGTTATGTGGATTTGAAAATGGAGAAAATGACCAAGTTGGTTGTTTCTATGATTACCAAAGAGGTCTCTCATCACATAATAAATCTAAAGCTATGAGAATCCTATCATTATCCATTGTGGGAACATCTCTCATTTGTGCTATTGGAGTGACATGCTTTGTATACTTCAAGATCAGAATTGCAGCTAGACAGAGATCTGCAGCAGCTGCAATATCACTACAACCTGCTACGGCTACAATGGGTCTAGACGAGTCTACGATCGAGTCATATCAGAAGCTAGTGTTAGGGGAGAGCCGACGATTGCCCGGACCCAATGGCGGATGCTGCTCGATATGCTTGTCGGATTACAAAAGCAAAGAGATAGTAAGATGCATTCCTAAATGCAGACATTGTTTCCATGCTGAATGCATAGATAAGTGGCTTCGTATGAATAGCTCATGCCCAATTTGCCGCAATTTTCCTTCTACTAACACTTGA 1092 0.3965 MEILKLFFYLCIIPIIYASHDCQISWCGDDNIVIRFPFQLESEQQDPHCGYSGFELLCSNDSKAILKLPHTEKFYVRNINYIRQQIQLYDPDHCLPKLLLSLNLSGSPFIAIFRNNYTFLSCSYPNTDSQLVPIECLSNSTNFVSSIPSVNLTNSLLESCHVIRNISVPAAWQGLLYEGNFRDDLSEDLRLTWYAPDCTECESQGMLCGFENGENDQVGCFYDYQRGLSSHNKSKAMRILSLSIVGTSLICAIGVTCFVYFKIRIAARQRSAAAAISLQPATATMGLDESTIESYQKLVLGESRRLPGPNGGCCSICLSDYKSKEIVRCIPKCRHCFHAECIDKWLRMNSSCPICRNFPSTNT* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1247 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 360 IPR013083 -
Lan16g1247 363 SMART ring_2 314 355 IPR001841 -
Lan16g1247 363 Pfam Wall-associated receptor kinase C-terminal 153 223 IPR032872 -
Lan16g1247 363 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 3 361 - -
Lan16g1247 363 ProSiteProfiles Zinc finger RING-type profile. 314 356 IPR001841 -
Lan16g1247 363 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 361 - -
Lan16g1247 363 SUPERFAMILY RING/U-box 313 358 - -
Lan16g1247 363 Pfam Wall-associated receptor kinase galacturonan-binding 22 90 IPR025287 GO:0030247
Lan16g1247 363 Pfam Ring finger domain 314 356 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1247 Lan-Chr16 20492385 20494430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1247 17 360 C3H Transcription Factor Family AT2G46495 43.059 7.60e-85 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1247 - - gmx:100799895 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1247 16 20492385 20494430 Lan11g0654 11 5444058 5446955 PCT
Lan11g0654 11 5444058 5446955 Lan16g1247 16 20492385 20494430 PCT