Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1243 ATGGAATCTAGTAACATTGATAGCAATATATTGTGTTTGAGTATGTTGGAAGAAGATGAACATAGCCATAATCAATTTTCTTCTTCAATCTCAAAGATACATTGCAATGTTCCAACCACTACAAGTGTTCATGATCTTCTTGAATGCCCTGTTTGCACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAATGGGCATACCCTTTGTTCAACATGTAAGACAAGAGTACACAACCGATGCCCGACTTGTAGACAGGAACTCGGTGACATAAGGTGTCTGGCATTGGAGAAGATAGCGGAATCACTTGAACTGCCTTGCAGATATATCTCTCTTGGGTGTCCCGAGATATTTCCCTATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTCAGACCGTATAACTGTCCTTACGCTGGTTCGGACTGTTCCGCTGTTGGAGATATTCCATACCTTGTTGCTCACTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTCAACCATCGTTATGTCAAGTCTAATCCCACGGAAGTAGAAAATGCTACGTGGATGCTAACGGTGTTCCACTGTTTTGGTCAGTATTTTTGTCTCCATTTTGAAGCCTTCCAGCTCGGTATGTCACCTGTTTACATGGCGTTCCTCCGATTCATGGGCGACGAAAGAGAGACACCGAACTACAGCTACAGCCTTGAGGTAGGAGGTAATGGGCGTAAACTAACTTACGAAGGGAGTCCGCGAAGCATTCGAGATAGCCATAAGAAAGTCAGAGACAGTCATGACGGCCTCATCATATACCGGAACATGGCGCTTTTCTTCTCCGGCGTGGATAAGAAAGAGTTGAAGCTAAGAGTGACAGGAAGGATATGGAAAGAACAGCAAAACCCTGATGGTGAAGTATGCATACCAAACATGTGTACTTAG 936 0.4359 MESSNIDSNILCLSMLEEDEHSHNQFSSSISKIHCNVPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSAVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPTEVENATWMLTVFHCFGQYFCLHFEAFQLGMSPVYMAFLRFMGDERETPNYSYSLEVGGNGRKLTYEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGVDKKELKLRVTGRIWKEQQNPDGEVCIPNMCT* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1243 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 157 IPR013083 -
Lan16g1243 311 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 290 IPR008974 GO:0005515
Lan16g1243 311 CDD Sina 163 291 - -
Lan16g1243 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 91 IPR013083 -
Lan16g1243 311 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 303 - -
Lan16g1243 311 CDD RING-HC_SIAHs 47 85 - -
Lan16g1243 311 PANTHER UBIQUITIN LIGASE SINAT3 1 303 - -
Lan16g1243 311 SUPERFAMILY TRAF domain-like 102 294 - -
Lan16g1243 311 ProSiteProfiles Zinc finger SIAH-type profile. 102 162 IPR013010 GO:0008270
Lan16g1243 311 SUPERFAMILY RING/U-box 43 89 - -
Lan16g1243 311 Pfam Seven in absentia protein family 91 290 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lan16g1243 311 ProSiteProfiles Zinc finger RING-type profile. 49 85 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1243 Lan-Chr16 20455429 20458638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1243 3 297 C3H Transcription Factor Family AT2G41980 71.186 3.75e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1243 K04506 - gmx:100782764 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0372 2 3639389 3642364 Lan16g1243 16 20455429 20458638 LSH