Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1240 ATGACGAGGCCAGTTTTCGTAGGGAACTTTGAATTTGATACTCGTCAATCAGAACTTGAACGTTTATTCTCAAAATACGGAAGAGTTGAACGCGTTGACATCAAATCTGGTTATGCTTTTGTCTATTACGAGGACGAGCGAGATGCTGAAGATGCAATTCGTGTGCTTGACAATTTTCCATTTGGTTATGAGAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGCGAACGTGGCCGCCATCCTAATGGCTCAAGGGCAAACCAGAAGCCCACAAGAACCCTATTTGTTATTAATTTTGATCCAAATCGTACTAGAGATCGTGATATAGAAAGGCATTTTGAACCTTATGGAAAGATTCATCATGTTCGAATCCGTCGGAATTTTGCATTTGTACAGTTCGAAACACAGGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGTAAAATACTGGACAGAGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATAGTGAGAGAGGTGACAGATATCATGACAGTCCCAGAAGAGGCAGTTATGGTAGATCACCGAGTCCAGCTTATCGGAGGCGACCAAGTCCTGATTATGGTCGTCCACGCAGCCCTGTGTATGATAGGCGTAGGAGCCCTGATTATGGCAGGCCTAGGAGCCCCGAACATGGCAGGCCTAGGAGCCCCGAACATGGCAGGCCTAGGAGCCCCGAACATGGTAGATATCGCAGTCGTTCACCAATTCGAAGGTCATGA 750 0.4667 MTRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWARGERGRHPNGSRANQKPTRTLFVINFDPNRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDSERGDRYHDSPRRGSYGRSPSPAYRRRPSPDYGRPRSPVYDRRRSPDYGRPRSPEHGRPRSPEHGRPRSPEHGRYRSRSPIRRS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1240 249 SMART rrm1_1 93 159 IPR000504 GO:0003723
Lan16g1240 249 SMART rrm1_1 4 71 IPR000504 GO:0003723
Lan16g1240 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 217 - -
Lan16g1240 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 61 IPR000504 GO:0003723
Lan16g1240 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 156 IPR000504 GO:0003723
Lan16g1240 249 Gene3D - 86 175 IPR012677 -
Lan16g1240 249 Gene3D - 1 85 IPR012677 -
Lan16g1240 249 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 217 IPR029537 GO:0000398|GO:0005681
Lan16g1240 249 MobiDBLite consensus disorder prediction 166 249 - -
Lan16g1240 249 MobiDBLite consensus disorder prediction 194 242 - -
Lan16g1240 249 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Lan16g1240 249 SUPERFAMILY RNA-binding domain, RBD 82 185 IPR035979 GO:0003676
Lan16g1240 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 75 IPR000504 GO:0003723
Lan16g1240 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1240 Lan-Chr16 20436657 20439243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1240 5 154 Eukaryotic Initiation Factors Gene Family AT4G34110 26.220 4.68e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1240 K12893 - gmx:100801043 403.675