LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan16g1235	ATGGGCCAGTGTTACGGCAAAACAAACCCAAATTCCGAAAACGACCATGCTCCGAACACAACCACCACCACCGGCGACGGCGACGGTGACCGTTCTCCTCTTCCTATCTCCGCCGTTGGTAACGGTTATAATTCAGTGAAAAACACGCCGGCGAGGTCGTCTTCTTCTCAGGCAAGCCCATGGCCGAGTCCATACCCTCACGGTGAAGGTGTGTCGCCGTCTCCGGCGAGGGGTACGACGCCGAGGAGGTTTTTCCGGAGGCATTTTCCGCCGCCGTCTCCGGCGAAGCATATAAGGGCGTCGTTGGTGAAGCGGCTGGGGAAGCAGACGCCGAAGGAGGGGACGATACCGGAGGAGGGGCGAAGCCGAAGCCCCGAGGAGTCGGTGGCGGCGACGGAGGAGCAGGCACTGGATAAGAGGTTTGGTTATGGGAAGAATTTTGGTGCAAAGTATGAATTGGGAAGGGAAGTAGGGAGAGGGCATTTTGGTCATACTTGCTATGGTAGAGGGAAGAAGGGTGAGCTTAACAACAAGCCTGTTGCTGTTAAAATCATTTCCAAGGCTAAGATGACCACGGCAATAGCAATCGAAGATGTTCGTAGAGAGGTGAAGCTATTAAAAGCTCTATCCGGCCATAAACATCTCATCAAATTTCATGATGCTTTTGAGGATTCGAATAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACCGAATTTTGTCAAGGGGAGGAAGGTATACGGAGGAGGACGCAAAGGTTATAGTTTTGCAGATTCTCAGCGTTGTTGCCTTTTGTCATCTTCAAGGTGTTGTGCACCGTGACTTGAAGCCTGAGAATTTCCTCTTCACTTCAAGAAGTCAAGACGCCGATGTGAAGCTTATCGATTTTGGTCTATCCGACTTCATTAGACCAGATGAACGGCTGAATGACATTGTCGGGAGTGCATATTATGTTGCACCGGAGGTCCTACACAGGTCATATAGTGTAGAAGCAGATATATGGAGTATTGGTGTTATTACCTTCATCTTATTATGTGGAAGTCGACCTTTCTGGGCACGAACAGAATCTGGGATTTTTCGTTCCGTGCTCAGAGCTGATCCTAACTTTGACGATTTACCTTGGCCTTCTGTATCTCCAGAGGCCAAGGACTTTGTAAAAAGGCTTCTAAACAAGGACTACAGGAAAAGAATGTCTGCTGCCCAAGCTCTAGCTCATCCGTGGTTGAGGGACGACAACCACCCTATCCCTTTGGATATATTAACTTATAAATTAGTGAAGTCTTATCTTCATGCAACACCATTCAAATGCGCAGCAGCGAAGGCCCTTTCGAAAGCATTGACGGAGAAAGAGTTGGTGTATCTTGGAGCACAATTCAGATTATTGGAACCAAATAGAGATGGATATGTATCCCTTGAAAATTTTAAAATGGCTCTTGCACGACATGCAACCGATGCTATGAGCGAGTCGAAGGTTCTTGACATCATAAACACGATGGAACCACTTGCAAATAGAAAAATGGATTTTGAAGAATTTTGTGCAGCTGCAACTAGCACATATCAATTAGAGGCACTTGATAAATGGGAAGATATTGCCAACAATGCATTTGAGCACTTTGAAAGAGAGGGCAATCGTGTCATATCTATTGAAGAATTAGCAATAGAATTGAATCTTGGTCCTTCAGCTTATTCAATTCTCAAAGATTGGATAAGAGATGATGGAAAACTTAATTTATTTGGATATACAAAATTTTTGCATGGTGTTACTCTCAGAACTTCAAACCCAAGACAACGTTAG	1809	0.4566	MGQCYGKTNPNSENDHAPNTTTTTGDGDGDRSPLPISAVGNGYNSVKNTPARSSSSQASPWPSPYPHGEGVSPSPARGTTPRRFFRRHFPPPSPAKHIRASLVKRLGKQTPKEGTIPEEGRSRSPEESVAATEEQALDKRFGYGKNFGAKYELGREVGRGHFGHTCYGRGKKGELNNKPVAVKIISKAKMTTAIAIEDVRREVKLLKALSGHKHLIKFHDAFEDSNNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSQDADVKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITFILLCGSRPFWARTESGIFRSVLRADPNFDDLPWPSVSPEAKDFVKRLLNKDYRKRMSAAQALAHPWLRDDNHPIPLDILTYKLVKSYLHATPFKCAAAKALSKALTEKELVYLGAQFRLLEPNRDGYVSLENFKMALARHATDAMSESKVLDIINTMEPLANRKMDFEEFCAAATSTYQLEALDKWEDIANNAFEHFEREGNRVISIEELAIELNLGPSAYSILKDWIRDDGKLNLFGYTKFLHGVTLRTSNPRQR*	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan16g1235	602	Gene3D	-	434	590	-	-
	Lan16g1235	602	SUPERFAMILY	Protein kinase-like (PK-like)	150	434	IPR011009	-
	Lan16g1235	602	SUPERFAMILY	EF-hand	445	588	IPR011992	-
	Lan16g1235	602	MobiDBLite	consensus disorder prediction	111	134	-	-
	Lan16g1235	602	Pfam	Protein kinase domain	151	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan16g1235	602	Gene3D	Transferase(Phosphotransferase) domain 1	238	433	-	-
	Lan16g1235	602	SMART	serkin_6	151	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan16g1235	602	PANTHER	CDPK-RELATED KINASE 3	57	595	-	-
	Lan16g1235	602	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	275	287	IPR008271	GO:0004672\|GO:0006468
	Lan16g1235	602	ProSiteProfiles	Protein kinase domain profile.	151	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan16g1235	602	MobiDBLite	consensus disorder prediction	1	28	-	-
	Lan16g1235	602	ProSitePatterns	Protein kinases ATP-binding region signature.	157	183	IPR017441	GO:0005524
	Lan16g1235	602	ProSiteProfiles	EF-hand calcium-binding domain profile.	454	489	IPR002048	GO:0005509
	Lan16g1235	602	Gene3D	Phosphorylase Kinase; domain 1	147	237	-	-
	Lan16g1235	602	CDD	STKc_CAMK	150	412	-	-
	Lan16g1235	602	PANTHER	SERINE/THREONINE-PROTEIN KINASE	57	595	-	-
	Lan16g1235	602	MobiDBLite	consensus disorder prediction	1	134	-	-
	Lan16g1235	602	MobiDBLite	consensus disorder prediction	38	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan16g1235	Lan-Chr16	20337363	20342400	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan16g1235	1	596	EF-hand Containing Proteins	AT3G50530	56.636	0.0	691

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Lan16g1235		Pkinase	3.7e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan16g1235	-		-	gmx:100796256	917.916