Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1230 ATGTCGGAAGGTGCAGAAATTAATGAGCGTGTGGACTTTGAGGAGGAAAATTATATGGAAGAAATTGACGATGATGTTGAAGAGCAGATAGACGATGGTGGAGTCGATGGAAGTGAAGATGAAAACGCTGAAGGTAGTGCTGATGAACATGAGGGTGAAGAGTCAGCAGCAGAGGCTGGTGGAAAAGACCAATTGCCTCAAGCCGAAAGAAGTGACATTGCTGATGAAATTGTCGAAAATGAACAAAAATCATCTTCTGTTAATGAAGAGGAGAAAGAGAAGCACGATGAACTTCTTGCCCATCCTCCTCATGGTTCCGAGGTCTTTATCGGTGGTCTGCCTCGGGATGCACATGAAGATGATTTAAGGGAATTGTGTGAGTCGATGGGTGACATTATTGAGGTCCGATTAATGAAAGACAAGGACACCGGAGTAAACAAGGGTTATGCTTTTGTGGCTTTTAAAACAAAAGAGGTCGCGCAAAAGGCCATTGAAGAGATACATAACAAGGAATTTAAGGGTAAAACTTTGAGGTGTTCTTTGTCTGAAACAAAACACAAACTATTCATAGGCAGTATTCCAAAGACTTTGACAGAGGATGAGTTTAGGAAAGTCCTTGAGAATGTTGGTCCTGGAGTTGAAAACATCGATCTCAAAAAGGACCCTCTGAATCCAAGCAGGAATCGTGGTTTTGCTTTTGTTTCGTATTACAATAACGCATGTGCTGATTATTCACGGCAGAAGATGTCTAATACGAGTTTTAAGCTGGATGGTAGTTCCCCTTCTGTCACATGGGCTGATCCAAAGACCTCACCTGACCATTTTGCTTCTTCACAGGTTAAAGTTCTATATGTGAAAAACATACCTGAGAATGTTAGTACCGAACAACTGAAGGAACTATTCCGTCGTCACGGAGAAGTAACAAAAGTGGTCATGCCAGCTGGTAGAGTTGGAACAAAACGTGATTTTGGTTTCATTCATTATGCGGAGAGGTCAAGTGCATTGGAAGCTATAAAAGATACAGAGAAATATGAAATCGATGGCCAAGAGCTTGAAGTCGTTCTTGCCAAGCCTCAAGCCGAGAAAAAACATGATGGAGGTTATGCCTACAATCCCGGATTTCATTCAAACCATCTTCCACCTCCTGCGTATGGTGCCTTTTCTGGCAATCTTTATGGATCTGGAGAGGGTGGATATGGTGTTTCTGCTGGTTATCATCAGCCTATGATATATGGTCGGGGTCCAATGCCAGTAGGCATGCAGATGGTTCCGATGGTATTACCCGATGGCCAAATCGGCTATGTCCTTCAACAGCCCGGTGTACAGGGGCCACCTGCTCGACCCCGTAGAAACGATCGAAACGATGGTCGAAATGGTCACGGAAGGCGAGGTGGTGATGGCAATGATGATGGCAATCGAAGTAGAAGGTACCGGCCTTATTAG 1443 0.4401 MSEGAEINERVDFEEENYMEEIDDDVEEQIDDGGVDGSEDENAEGSADEHEGEESAAEAGGKDQLPQAERSDIADEIVENEQKSSSVNEEEKEKHDELLAHPPHGSEVFIGGLPRDAHEDDLRELCESMGDIIEVRLMKDKDTGVNKGYAFVAFKTKEVAQKAIEEIHNKEFKGKTLRCSLSETKHKLFIGSIPKTLTEDEFRKVLENVGPGVENIDLKKDPLNPSRNRGFAFVSYYNNACADYSRQKMSNTSFKLDGSSPSVTWADPKTSPDHFASSQVKVLYVKNIPENVSTEQLKELFRRHGEVTKVVMPAGRVGTKRDFGFIHYAERSSALEAIKDTEKYEIDGQELEVVLAKPQAEKKHDGGYAYNPGFHSNHLPPPAYGAFSGNLYGSGEGGYGVSAGYHQPMIYGRGPMPVGMQMVPMVLPDGQIGYVLQQPGVQGPPARPRRNDRNDGRNGHGRRGGDGNDDGNRSRRYRPY* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1230 480 MobiDBLite consensus disorder prediction 448 480 - -
Lan16g1230 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Lan16g1230 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 255 IPR000504 GO:0003723
Lan16g1230 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Lan16g1230 480 SUPERFAMILY RNA-binding domain, RBD 99 185 IPR035979 GO:0003676
Lan16g1230 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 478 - -
Lan16g1230 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Lan16g1230 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Lan16g1230 480 Gene3D - 187 267 IPR012677 -
Lan16g1230 480 CDD RRM3_hnRNPR_like 280 358 - -
Lan16g1230 480 MobiDBLite consensus disorder prediction 68 102 - -
Lan16g1230 480 SUPERFAMILY RNA-binding domain, RBD 187 272 IPR035979 GO:0003676
Lan16g1230 480 SUPERFAMILY RNA-binding domain, RBD 274 372 IPR035979 GO:0003676
Lan16g1230 480 PANTHER GEO13361P1-RELATED 2 478 - -
Lan16g1230 480 MobiDBLite consensus disorder prediction 435 480 - -
Lan16g1230 480 MobiDBLite consensus disorder prediction 1 105 - -
Lan16g1230 480 MobiDBLite consensus disorder prediction 13 48 - -
Lan16g1230 480 CDD RRM_SF 108 180 - -
Lan16g1230 480 Gene3D - 11 186 IPR012677 -
Lan16g1230 480 Gene3D - 271 404 IPR012677 -
Lan16g1230 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Lan16g1230 480 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lan16g1230 480 SMART rrm1_1 282 354 IPR000504 GO:0003723
Lan16g1230 480 SMART rrm1_1 187 264 IPR000504 GO:0003723
Lan16g1230 480 SMART rrm2_1 107 180 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1230 Lan-Chr16 20299621 20303498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1230 108 421 Eukaryotic Initiation Factors Gene Family AT1G71770 27.027 1.10e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1230 K13161 - gmx:100800974 706.442