Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan16g1229 | ATGGTTCTCAAGACTGAACTTTGCCGATTTAGTGGGGCGAAGATATACCCAGGGAGAGGTATCCGATTTATTCGTGGCGATTCGCAGGTTTTTCTGTTTGTGAACTCGAAATGTAAACGATACTTCCACAATCGGTTGAAGCCATCGAAGCTCACCTGGACCGCCATGTATAGGAAGCAACACAAGAAGGATGCTGCTCAAGAAGCTGTGAAGAAGAAGCGTCGTGCTACCAAAAAGCCATACTCTAGGTCCATTGTTGGTGCTACTTTGGAAGTTATCCAGAAAAGAAGAACTGAGAAGCCGGAAGTTCGAGATGCTGCCAGAGAAGCTGCTCTTCGTGAAATTAAAGAGAGGATCAAGAAGACAAAGGATGAGAAGAAGGCTAAAAAGGCAGAGGTAGTAGCCAAGTCACAAAAATCAGGCAAAGGTAATGTTTCAAAGGGCGCTGCGCCGAAAGGTCCCAAACTCGGAGGTGGAGGTGGGAAACGCTGA | 492 | 0.4675 | MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMYRKQHKKDAAQEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVVAKSQKSGKGNVSKGAAPKGPKLGGGGGKR* | 164 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan16g1229 | 163 | MobiDBLite | consensus disorder prediction | 120 | 163 | - | - | |
| Lan16g1229 | 163 | Pfam | Ribosomal protein L24e | 4 | 67 | IPR000988 | - | |
| Lan16g1229 | 163 | CDD | Ribosomal_L24e_L24 | 3 | 56 | IPR000988 | - | |
| Lan16g1229 | 163 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 6 | 58 | - | - | |
| Lan16g1229 | 163 | PANTHER | 60S RIBOSOMAL PROTEIN L24 | 3 | 163 | - | - | |
| Lan16g1229 | 163 | ProSitePatterns | Ribosomal protein L24e signature. | 10 | 27 | IPR023442 | - | |
| Lan16g1229 | 163 | Coils | Coil | 112 | 132 | - | - | |
| Lan16g1229 | 163 | MobiDBLite | consensus disorder prediction | 120 | 136 | - | - | |
| Lan16g1229 | 163 | Gene3D | Ribosomal protein L24e | 3 | 64 | IPR038630 | - | |
| Lan16g1229 | 163 | SMART | 4TRASH | 8 | 46 | IPR011017 | - | |
| Lan16g1229 | 163 | Gene3D | - | 69 | 138 | - | - | |
| Lan16g1229 | 163 | PANTHER | 60S RIBOSOMAL PROTEIN L24 | 3 | 163 | IPR000988 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan16g1229 | Lan-Chr16 | 20298063 | 20316585 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan16g1229 | 1 | 156 | Cytoplasmic Ribosomal Protein Gene Family | AT2G36620 | 85.987 | 1.90e-87 | 251 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan16g1229 | K02896 | - | dcr:108225184 | 238.81 |