Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1208 ATGGAAGGTTTCAAAGTTGTTTTATGGCTCATCTTTTTGTTTCTGTGCAATTTGGTTGTTGAGTGCAGTGACAGCCTTCTCTCTCCAAAGGGTGTTAACTATGAAGTGGCTGCTTTGATGTCAATGAAGAGGGAGATGAATGATGAGTTGCATGTTATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGGCCATGGTTGGTTGTTCTGCTGAGGGTTATGTCATTTCACTGGAAATGGCGAGTGCAAGTTTATCTGGAACGCTTTGTCCAGGAATTGGAAATTTGACCCACCTTCAAACATTGTTATTGCAGAACAATAAGTTATCTGGTCCTATCCCTGCTGAGATAGGAAAGCTGTTAGAGCTACGGACCCTTGACCTTTCTGGTAACGAGCTCGCTGGTGAAATTCCTAGCTCTTTGGGCTTTTTGACTCATCTAAGTTACTTGCGGCTCAGCAGAAATAAACTATCTGGACAGATCCCTCAACTTGTTGCTAATCTCACTGGCCTTTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGTCACTCTCCAAAAATTCTAGCAAAAGGTTACAGTATTTCAGGAAACAATTTCCTCTGCACATCTTCACAAAGTTGTATGAATGTTTCAGAACTATTAAATGATACAGGGTCATCTCAGAAAGTCAGTAGCCATCACCGGAAGGTGCTTTCTGTTGTTATTAGCATTAGTTGCACTTTCGTAATTTCGGTGATGCTGCTTGTCTATTGGTTGCAGTGGTACAGATCACGCATCCTCTATTCATCTTATGTGGAGCAAGATTATGAATTTGATATTGGTCATTTAAAGAGGTTCTCCTTCCGCGAATTGCAAAGTGCTACTGCAAATTTCAGTCCAAAAAATATTGTAGGACAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCAAACAAAATGTTGGTAGCCGTGAAGAGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAGATGATTGGTATGGCTGTGCATCGGAATCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTTGTTTATCCTTTCATGCCCAATGGCAGTGTTGCTGATCGGTTGAGAGAAACATGTCGTGAAAAGCCAGCTTTAGACTGGAACAGGCGAATGCATGTTGCTCTTGGGGCTGCCCGTGGTCTTCTGTATTTGCACGAACAGTGCAGCCCAAAAATAATCCACAGGGATGTTAAGGCAGCAAACATTTTGCTAGACGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTGCGGGGTACTGTAGGGCACATTGCCCCGGAGTATCTCTCAACTGGACAGTCTTCCGAAAAAACAGATGTTTTTGGATTCGGCATATTACTTTTGGAGCTCATAACAGGACAAAAGGCACTGGGTACTGGAAATGGTCAGATCCAAAAGGGAATGATTCTTGACAGGGTTAGAACATTATCCGAAGAGAAGCGGCTCGAAGCGTTAGTTGATAGAGATCTAAAGGGGTGTTTTGATCCAGTAGAATTGGAAAAGGCAGCAGAGTTGTCTTTACAGTGTACTCAGTCACTTCCTAGTTTGCGGCCGAAGATGTCAGAAGTCTTGAAGATTCTAGAAAGCCTAGTTGGACAGTCATTGAGGGCAGAGGAGTCACAAGGGGGAGGTAACCTTTATGATGAAAGGACTTGCAGTTTCTCTCAAAACTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCAATTGAACTTTCTGGGCCTAGGTGA 1854 0.4256 MEGFKVVLWLIFLFLCNLVVECSDSLLSPKGVNYEVAALMSMKREMNDELHVMDGWDINSVDPCTWAMVGCSAEGYVISLEMASASLSGTLCPGIGNLTHLQTLLLQNNKLSGPIPAEIGKLLELRTLDLSGNELAGEIPSSLGFLTHLSYLRLSRNKLSGQIPQLVANLTGLSFLDLSFNNLSGHSPKILAKGYSISGNNFLCTSSQSCMNVSELLNDTGSSQKVSSHHRKVLSVVISISCTFVISVMLLVYWLQWYRSRILYSSYVEQDYEFDIGHLKRFSFRELQSATANFSPKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGMAVHRNLLRLYGFCMTPDERLLVYPFMPNGSVADRLRETCREKPALDWNRRMHVALGAARGLLYLHEQCSPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALGTGNGQIQKGMILDRVRTLSEEKRLEALVDRDLKGCFDPVELEKAAELSLQCTQSLPSLRPKMSEVLKILESLVGQSLRAEESQGGGNLYDERTCSFSQNYSDVHEEPSFIIEAIELSGPR* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1208 617 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 617 - -
Lan16g1208 617 Gene3D Transferase(Phosphotransferase) domain 1 370 578 - -
Lan16g1208 617 SMART LRR_typ_2 170 193 IPR003591 -
Lan16g1208 617 SMART LRR_typ_2 146 169 IPR003591 -
Lan16g1208 617 SMART LRR_typ_2 98 122 IPR003591 -
Lan16g1208 617 SUPERFAMILY L domain-like 34 205 - -
Lan16g1208 617 SMART serkin_6 294 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1208 617 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Lan16g1208 617 Gene3D Ribonuclease Inhibitor 32 212 IPR032675 -
Lan16g1208 617 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Lan16g1208 617 Gene3D Phosphorylase Kinase; domain 1 264 369 - -
Lan16g1208 617 SUPERFAMILY Protein kinase-like (PK-like) 276 566 IPR011009 -
Lan16g1208 617 Pfam Protein kinase domain 297 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1208 617 ProSiteProfiles Protein kinase domain profile. 294 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1208 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Lan16g1208 617 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1208 Lan-Chr16 19747339 19752496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1208 40 617 Receptor kinase-like Gene Family AT5G45780 70.912 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lan16g1208 Pkinase 7.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1208 - - gmx:100810610 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1208 16 19747339 19752496 Lan16g1208 16 19747339 19752496 ECH