Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1207 ATGGCTGAGGATAAGGAGACACCGACATCTGTTATCAATGATTCCCTCACCGGTCACATCATCTCTACTACAATTGGAGGCAAAAATGGGGAGCCCAAACAGACTATCAGTTACATGGCAGAACGTGTTGTAGGAACTGGATCATTCGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAGAAGGTTTTGCAAGACCGAAGATATAAGAGTCGTGAACTACAGTTAATGCGTGTGATGGATCATCCAAATGTGGTCTCTCTGAAGCATTGTTTCTTTTCAACTACGAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCTATGTACCGGGTCTTAAAGCACTACAGTAACGCTAATCAAAGAATGCCCATTATCTATGTAAAACTTTACATGTACCAGATTTTCAGGGGTTTGGCCTATATCCACACTGTTCCTGGAGTTTGCCATAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACACACCAAGTTAAGCTATGTGATTTTGGAAGTGCAAAAATGCTAGTCAAAGGTGAAGCAAATATATCTTACATATGTTCACGGTTCTATCGAGCTCCGGAACTTATATTTGGTGCCACAGAGTATACTACTTCAATTGATATCTGGTCAGCTGGCTGCGTCCTTGCAGAACTGCTTTTGGGCCAGCCATTATTCCCTGGTGAAAATGCAGTGGATCAGCTTGTTCATATTATAAAGGTGCTTGGAACACCCACTCGAGAGGAAGTGCGCTGTATGAATCCTAATTACAACGACTTCAGGTTTCCACAGATAAAAGCACACCCATGGCATAAGATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCTTCCAGGCTTTTGCAATACTCCCCAAGCCTTCGGTGCTCTGCGCTAGAAGCATGTGCGCATCCTTTCTTTGATGAACTCCGAGAACCCAATGCTCGCCTACCAAATGGTCGTCCATTGCCCCCTCTTTTCAACTTCAAACAGGAATTATCCGGAGGATCTCCAGAGCTTGTTAATAAGTTGATACCTGACCATGTGAAGCGGCAATTAGGGCTACAATTTGCTCATCAGGCTGGATCTTGA 1137 0.4318 MAEDKETPTSVINDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKSRELQLMRVMDHPNVVSLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKLCDFGSAKMLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGGSPELVNKLIPDHVKRQLGLQFAHQAGS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1207 378 CDD STKc_GSK3 33 325 IPR039192 -
Lan16g1207 378 ProSiteProfiles Protein kinase domain profile. 38 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1207 378 Pfam Protein kinase domain 38 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1207 378 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 372 - -
Lan16g1207 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Lan16g1207 378 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Lan16g1207 378 Gene3D Phosphorylase Kinase; domain 1 23 117 - -
Lan16g1207 378 SMART serkin_6 38 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1207 378 PANTHER BNAANNG31110D PROTEIN 1 372 - -
Lan16g1207 378 Gene3D Transferase(Phosphotransferase) domain 1 118 365 - -
Lan16g1207 378 SUPERFAMILY Protein kinase-like (PK-like) 37 346 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1207 Lan-Chr16 19741195 19745383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1207 42 360 MAP Kinase Gene Family AT3G59790 35.928 8.65e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lan16g1207 Pkinase 1.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1207 K14502 - gmx:100779909 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1207 16 19741195 19745383 Lan16g1207 16 19741195 19745383 ECH
Lan4g0299 4 5003223 5007722 Lan16g1207 16 19741195 19745383 LSH