Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1204 ATGAAACCCTTTTTCATATTCTTGATTCTCCTTACACTCTTTGCTATAGTAGAATCTTCATGTAATATTAGAGACCTAGACCTTGTTTCTAAGGCCTTTCATTCTGTATCTGGATTCAACCCTTTATGGGTCAAAACAAAAGCTTCTTCTTCATCCAACTGTTCAACCCTTCAGGTTACAAAGATAGAGCTTCCATCAAAGAATTTGAGTGGAAGTATCTCATGGGGGTACCTTAGAAACATGTCAAAGTTAGAGGTTTTAGATCTTTCTGAGAATTCACTTCAAGGCCAGGTTCCAAACTGGTTCTGGACAAGTACAACCTTATTAGTAGTGAATCTCTCTAACAACAAATTTGGAGGGAACATTGCTTTGAAATATCAACCCACTTCACAAAATGGTTCCTTTTCATCATTGCAAACACTTAATCTCTCACACAATAGGTTCACCAATCAAGTTCATCTTTCTGGATTCTCAAGCCTGAAAACCCTAGACCTTTCTCATAACAATCTTGTTACTTTACCCTCTGGCTTTGAAAAGGTTACCAACCTACACCACCTTGATCTTTCAAACTGCAACATCAAAGGAAACGTAAAACCCATTTCAAACCTTCATTCACTCACTTATCTAGACTTGTCAAACAACACTTTGAATGGTAGTTTCCCTTCTGATTTCCCTCCTCTCAACACCATCAAATTCTTCAACATCTCACATAATAACTTCAAAGCATTAGTCACGTTAGACAAGTTCAAGAAATTCAACAAATCAGCTTTCATTCACGCTGGTAAAAACTTCAACTACTACAACACATCCAAAAACATCGTCAAACATAAACAAAAACAAAAACATGTTCCATTACACCACCCCATTGATGAAAAGAAAAGGAAACACAAATCAAAAACTAAACTCATTGCATTGTGTTGCGTGGCAGTGTCTGTGTTTATCTTAGCATCAACGTATACAATGTGGAGTTACAGAAAGAAGAAGCAAATGCAGAAAAGGAAGAACAAATGGGCAATCTCAAAACCGGTGTCGTTTAACGGAATCAAGGTAGAGAAATCTGGACCCTTCGAATTCGAAACAGAATCAGGTTCATCATGGGTCGTAGATTTAAAGGAACCGTCTTCTGCGGCGGTGGTCATGGTGGAGAAGCCGTTGATGAATCTGAGTTTCAAGGAACTCATTGCTGCCACGTCACACTTCGGGAAAGAGTCACAACTCGCTGAGGGAAGGTGTGGGCCCGTTTACCGAGCAGTGTTACCAGGAGAGATCCACGTGGCAATCAAGGTTCTTGAGAATGCGAGAGACGTTGATTATGATGATGCTGTTGACATTTTCGTTGACCTTGCGAAGCTTAAGCATCCAAATTTGTTGACCCTCTCTGGTTATTGCATTGCAGGTAAGGAGAAGCTTGTATTATACGAATTTATGTCAAACGGTGATTTGGGTAGATGGCTACATGAGTTACCCACTGGTGAGACCAACGTGGAAGATTGGAGTAATGACACATGGGAGATTATTCAAAACGGTGTCGTTTCACATGCCACATCACCCGAAAAGATGGGTTGGCCCACACGACATCGTATCGCCGTAGGGGTGGCGCGTGGCCTAGCCTTTCTCCACCACGCGGGATCCAAGCCCGTCGTGCATGGCCACCTTGTCACGTCAAATGTGTTACTCGCCGACGACTTTGAGCCTCGAATCGCTGATTTTGGGTTCCGGAGAATCGGGAGGAACCAAAACGCGCCGAATTGTTTCAGCACAGAGAGTGATGTGTACTGCTTTGGGGTGGTGCTGATGGAGCTACTAACTGGGAGGTCCGGCACGGCGGAGACGGTGGTTTGGGTTAGGAAATTGGTGAGGGAAGGTCACGGTGTGCGTGCTTTGGATGAGAGGGTGAGTCAACTAGGTGGTGGTGACTCGGAGAGTGAGATGGTTGAGTGTCTCCGAGTCGCGTATCTTTGTACGGCCGAGTCACCTGGTAAAAGACCCAGTATGAGGCAGGTATTGGGTCTTCTCAAAGATGTTCATCCGAGTCGCCAACTCGACTGA 2049 0.4378 MKPFFIFLILLTLFAIVESSCNIRDLDLVSKAFHSVSGFNPLWVKTKASSSSNCSTLQVTKIELPSKNLSGSISWGYLRNMSKLEVLDLSENSLQGQVPNWFWTSTTLLVVNLSNNKFGGNIALKYQPTSQNGSFSSLQTLNLSHNRFTNQVHLSGFSSLKTLDLSHNNLVTLPSGFEKVTNLHHLDLSNCNIKGNVKPISNLHSLTYLDLSNNTLNGSFPSDFPPLNTIKFFNISHNNFKALVTLDKFKKFNKSAFIHAGKNFNYYNTSKNIVKHKQKQKHVPLHHPIDEKKRKHKSKTKLIALCCVAVSVFILASTYTMWSYRKKKQMQKRKNKWAISKPVSFNGIKVEKSGPFEFETESGSSWVVDLKEPSSAAVVMVEKPLMNLSFKELIAATSHFGKESQLAEGRCGPVYRAVLPGEIHVAIKVLENARDVDYDDAVDIFVDLAKLKHPNLLTLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGETNVEDWSNDTWEIIQNGVVSHATSPEKMGWPTRHRIAVGVARGLAFLHHAGSKPVVHGHLVTSNVLLADDFEPRIADFGFRRIGRNQNAPNCFSTESDVYCFGVVLMELLTGRSGTAETVVWVRKLVREGHGVRALDERVSQLGGGDSESEMVECLRVAYLCTAESPGKRPSMRQVLGLLKDVHPSRQLD* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1204 682 ProSiteProfiles Leucine-rich repeat profile. 137 158 IPR001611 GO:0005515
Lan16g1204 682 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 682 - -
Lan16g1204 682 Gene3D Ribonuclease Inhibitor 28 128 IPR032675 -
Lan16g1204 682 Pfam Protein tyrosine and serine/threonine kinase 403 669 IPR001245 GO:0004672|GO:0006468
Lan16g1204 682 ProSiteProfiles Protein kinase domain profile. 400 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1204 682 Gene3D Ribonuclease Inhibitor 129 262 IPR032675 -
Lan16g1204 682 ProSiteProfiles Leucine-rich repeat profile. 159 180 IPR001611 GO:0005515
Lan16g1204 682 SUPERFAMILY L domain-like 50 244 - -
Lan16g1204 682 PRINTS Leucine-rich repeat signature 160 173 - -
Lan16g1204 682 PRINTS Leucine-rich repeat signature 203 216 - -
Lan16g1204 682 PANTHER KINASE, PUTATIVE-RELATED 3 682 - -
Lan16g1204 682 Gene3D Transferase(Phosphotransferase) domain 1 476 681 - -
Lan16g1204 682 Pfam Leucine rich repeat 137 193 IPR001611 GO:0005515
Lan16g1204 682 Pfam Leucine rich repeat 61 118 IPR001611 GO:0005515
Lan16g1204 682 SMART LRR_typ_2 81 104 IPR003591 -
Lan16g1204 682 SMART LRR_typ_2 203 226 IPR003591 -
Lan16g1204 682 SMART LRR_typ_2 157 179 IPR003591 -
Lan16g1204 682 Gene3D Phosphorylase Kinase; domain 1 360 475 - -
Lan16g1204 682 SUPERFAMILY Protein kinase-like (PK-like) 379 672 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1204 Lan-Chr16 19713380 19716965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1204 57 675 Receptor kinase-like Gene Family AT5G07280 30.183 7.76e-74 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Lan16g1204 PK_Tyr_Ser-Thr 3.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1204 - - gmx:100778920 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1204 16 19713380 19716965 Lan16g1204 16 19713380 19716965 ECH
Lan12g0518 12 11869635 11873543 Lan16g1204 16 19713380 19716965 PCT
Lan16g1204 16 19713380 19716965 Lan12g0518 12 11869635 11873543 PCT