Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1193 ATGGCAGGAAAGAAGCTTAACCTAGGATACATAGCTAGTGACTCAAAGAGGAATACAACATACAAGAAAAGAAAACATGGTCTAATCAAGAAGATGGATGAGATTAGTACCCTTTGTGGGATTGAAGCATGTGCTATAATATATAACTCCAATGAACCTCAACCAGAGGTTTGGCCATCCCATTTGGGAGCCCAAAGGGTTCTCTACAAGTTTAGTAGAGTGTCTCAAATGGTACAAAGCAAAAAGATGTTCAATCAAGAAAGTTTCTTGAACCAAAGCATCATGAAAGCCCAAGAGAAGTTGAAGAAGTTGAGGAATGAGAATAGGAAGAAGGAGATGGATCTTCTCATGTATCAATGTTTGAGTAGTGGGTACCTTGTTAACAATGTTAGCATGGCTAATTTGAATGGCCTTTCATGGAGGATTGATCAAACCCTAAAGGAGATTGAAAGAAATGTCACTAAGGACCAACCCCAAGAAAGGTCTCCAATGTTTACAAATGGGGGAGAAGTCATCAATGAAGAGAATGAGAATGTAGCTGTGAATGATCGTTTCAAAGGGATGATGCAAAACAACATAGATGTCACACAAAACCAAAATTGGTGTATTGATTCAGCCAATGGTGGTGGAAATGAGATGCTTCGATATGGAGAATTGAACAACTCAAATGGTGTTTGGAATGACATTTTTTTCACTTAG 699 0.3848 MAGKKLNLGYIASDSKRNTTYKKRKHGLIKKMDEISTLCGIEACAIIYNSNEPQPEVWPSHLGAQRVLYKFSRVSQMVQSKKMFNQESFLNQSIMKAQEKLKKLRNENRKKEMDLLMYQCLSSGYLVNNVSMANLNGLSWRIDQTLKEIERNVTKDQPQERSPMFTNGGEVINEENENVAVNDRFKGMMQNNIDVTQNQNWCIDSANGGGNEMLRYGELNNSNGVWNDIFFT* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1193 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lan16g1193 232 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lan16g1193 232 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Lan16g1193 232 Gene3D - 14 119 IPR036879 GO:0003677|GO:0046983
Lan16g1193 232 CDD MADS_SRF_like 4 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan16g1193 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan16g1193 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan16g1193 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan16g1193 232 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 162 - -
Lan16g1193 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan16g1193 232 Coils Coil 87 114 - -
Lan16g1193 232 PANTHER MADS BOX PROTEIN 2 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1193 Lan-Chr16 19470039 19470830 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1193 1 153 Type I MADS-box Gene Family AT5G48670 47.712 8.14e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan16g1193 SRF-TF 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1193 - - lang:109329409 453.751