Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1187 ATGGCTGGTTCTGTAGGAGACAATGTCCACGCTGAGAAGAAGAAGTATGCCATTCTCGGCGTATCTTCGGTGCTTCTTGTTGCTATGGTTGGTGCGGTTGCCATTGGTTTCACGCAAGGTGGAAGCTCGGGTCACGGTGCTGCGGAGATCTCGAGCTCTCAGAAGAATGCAGAGGTGATCTGTCAATCCACAGAATACAAAGATACTTGCATCAAAAGCCTTGATAAGGCGTCGAACACCACCGATGTGAAAGAGCTTGTGAAAATGGCTTTCAATTCCACAGCTGAGGAATTGTTAAGCAAAATGAACAACTCTACACTTTTCCAAGAGTTGGGTAAAGACAACATGACCAAACAGGCCTTGGATATATGCAGGGAAGTGTTTGATTATGCAATTGATGACATTCATAAATCAATTAACTCATTGGATAGTATGGAACTCAGCAAGTTAGGCCAATATGCCTATGACCTTAAGGTTTGGCTTGCAGGCACACTCTCACACCAACAGACTTGCTTGGCTGGTTTCGAGAACTCGAAAACAGAAGCTGGCGAGACAATGAAAAAAGCTTTAAACTCCTCAATGGAGCTAAGTAGCAATGCTGTTGATCTCATAAATACTGCCTCTGAACTCCTCAAGGGTCTCAACTTTAACTATTCTGAGCTAAGTAGTGCAATTTCTGGAAGGAGGCTTCTCTCTGAGGAAGAAGAACAACAACAACTTGTTGATGGTTTCCCTTCATGGGTGAGTGACGGACAACGGCGTCTTCTTCAGGCTGCACCTGGTGGTGGTGGCATTAAGGCTAACGCGGTCGTGGCTCAAGATGGGAGTGGACAGTTCAAAACACTCACTGATGCTCTTAAAACTGTTCCAAAGAATAATGCAGTGCCTTTTGTGATTCATGTTAAGGAGGGTGTGTACAAGGAGTATGTTATTTTGACCAAGTTTATGACCAATGTCACAATCATTGGAGATGGTCCTACAAAGACCATATTCACTGGCAGCAAAAACTACAAGGATGGTTTCCAAACTTACAACACTGCAACCTTTGGTGTTAATGCTGCAAACTTCATTGCTAAAGATATCGGGTTCGAGAACACAGCAGGATCAGAGAAACACCAAGCTGTAGCACTCAGGGTAACAGCTGACCAAGCAGTGTTCCACAACTGCAAAATGGATGGGTTCCAAGACACTCTCTATGTCCAATCCAAACGGCAATTCTACCGCGACTGCACTATCTCAGGCACAATCGACTTCATCTTCGGGGATGCAGTCGCAGTGTTCCAAAACTGCAAGCTAGTGGTAAGAAAACCCTTAGAGAACCAAAATTGCATGGTCACAGCAGGGGGAAGGATCAAGCTTGAAAGCCCAAGTGGCCTAATATTCCAAAATTGCCACTTCACTGGCGAGCCAGAACTAGCTACCTTGAACCCCAAGGTATCATACTTGGGAAGACCATGGAGAATTTACTCTAGGGTGGTCATCATGGATTCCACGATTGATGACATTTTTGTCCCTCAAGGTTATATGCCATGGATGGGTAGTGCATTCACAGACACATGCACCTTTTATGAGTACAACAACAAAGGTGTTGGTGCTAACACTGCATCAAGAGTGAAATGGCCTGGTGTTAAGGTCATAACACCTTCTGAAGCTTCTAATTTCTATCCAGGGAAGTTCTATGAGATTGCTAACACAACTCAACGTGATTCTTGGATTGTTAGTTCTGGTGTACCATATTCACTAGGACCCATTACCAATTCCAATGCTGCAAAACAATAG 1779 0.4435 MAGSVGDNVHAEKKKYAILGVSSVLLVAMVGAVAIGFTQGGSSGHGAAEISSSQKNAEVICQSTEYKDTCIKSLDKASNTTDVKELVKMAFNSTAEELLSKMNNSTLFQELGKDNMTKQALDICREVFDYAIDDIHKSINSLDSMELSKLGQYAYDLKVWLAGTLSHQQTCLAGFENSKTEAGETMKKALNSSMELSSNAVDLINTASELLKGLNFNYSELSSAISGRRLLSEEEEQQQLVDGFPSWVSDGQRRLLQAAPGGGGIKANAVVAQDGSGQFKTLTDALKTVPKNNAVPFVIHVKEGVYKEYVILTKFMTNVTIIGDGPTKTIFTGSKNYKDGFQTYNTATFGVNAANFIAKDIGFENTAGSEKHQAVALRVTADQAVFHNCKMDGFQDTLYVQSKRQFYRDCTISGTIDFIFGDAVAVFQNCKLVVRKPLENQNCMVTAGGRIKLESPSGLIFQNCHFTGEPELATLNPKVSYLGRPWRIYSRVVIMDSTIDDIFVPQGYMPWMGSAFTDTCTFYEYNNKGVGANTASRVKWPGVKVITPSEASNFYPGKFYEIANTTQRDSWIVSSGVPYSLGPITNSNAAKQ* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1187 592 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 206 IPR006501 GO:0004857
Lan16g1187 592 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Lan16g1187 592 Gene3D - 265 584 IPR012334 -
Lan16g1187 592 PANTHER PECTINESTERASE 8 587 - -
Lan16g1187 592 CDD PMEI-like_3 60 208 - -
Lan16g1187 592 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Lan16g1187 592 SMART PMEI_2 52 203 IPR006501 GO:0004857
Lan16g1187 592 SUPERFAMILY Pectin lyase-like 265 581 IPR011050 -
Lan16g1187 592 Pfam Pectinesterase 268 559 IPR000070 GO:0030599|GO:0042545
Lan16g1187 592 PANTHER PECTINESTERASE 8 587 - -
Lan16g1187 592 Pfam Plant invertase/pectin methylesterase inhibitor 60 202 IPR006501 GO:0004857
Lan16g1187 592 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 206 IPR035513 -
Lan16g1187 592 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 207 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1187 Lan-Chr16 19370093 19372996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1187 7 590 Carbohydrate Esterase AT3G05610 45.578 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1187 K01051 - gmx:100800194 787.334