Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1181 ATGTTCAGTCAAAGCATGGATTCTGCAAGGGATGTGGGTGGTGCTTCAGGGATAGTGCTAATTCCGATGCGATTTGTGTGGCCATATGGAGGAAGGAGTGTGTTCCTCAGTGGTTCTTTCACCCGGTGGTCTGAGCTTCTACCGATGTCACCGGTTGAAGGTTGCCCCACTGTATTCCAAGTTGTTTATAGTGTGCCCCCTGGTTGCCATCAGTACAAGTTTTTTGTTGATAGAGAATGGAGGCATGATGAAAATCAACCCTACATATCTGGAGAATATGGGATAGTCAACACTGTCTTCTTGGCTACAGATCCTAACTGCATACCTGTTGTAACTCCAGAGATTGCGTCTGGAAATAACATGGATGTGGATAATGAGGCTTTTCGTCGAACACAGGTCCGCTTGACAGATGGTACATTGAGTGAGTTGCTGCCTAGAATATCAGATGGCGATGTACAAATCTCCCGTCAGCGTATTTCTGAATTTCTGTGTATGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCCTTGGATATTGAACTGCCAGTGAAACAGGCATTTCATGTACTGCACGAGCAGGGAATTTATGTGGCTCCTCTTTGGGATTTCTGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTTCAGATTTTATTTTAATTTTAAGAGAGCTAGGGAACCATGGGTCTAATATGACAGAGGAAGAGCTTGAAACACATACTATATCAGCTTGGAAAGAAGGAAAATCATATTTAAATAGCCAGAATAATGGTCGCGGAACTGTATTTTCAAGAGGTTTTATCCATGCAGGACCATATGACAACCTGAATGCTATTGCCATGAAGATCTTGCAAAAGGGAGTTTCAATTGTTCCTATTGTCCATTCATCTTCTGAGGATGGTTCATTTCCACAGTTACTACATCTCACTTCACTTACAGGAATACTGAAATGCATTTGCAGGTATTTTAGGCATTGTCCTAGTTCGTTGCCTATACTTCAACTTCCAATTTGTGCATTACCTGTGGGAACATGGGTGCCCAAAATTGGGGAACCAAATCGGCGGCCTCTAGCAATGTTGAGACCAAGTGCTTCTCTTGCTTCAGCCCTAAACTTATTAGTTCAAGCCCGAGTAAGTTCAATACCAATAGTTGACGATAATGACTCATTGCTGGATATATATTGTCGGAGTGATATAACAGCTTTGGCAAAGGACAGAGCATATACACATATTAATCTTGACGAAATGACTGTTCAACAGGCCTTGCAGTTGGGCCAGGACGCAAATAGTCCCTACGAGTTTAGAAGTCAACGGTGTCAGATGTGTTTGCGGTCTGATTCTCTGCATAAAGTGATGGAACGATTGGCAAATCCAGGTGTCAGGAGGATTGTGATTGTGGAAGCTGGAAGCAACCGTGTAGAAGGCATTGTTTCATTGGGTGACATATTCAAATTCTTCCTTGGTTAG 1476 0.4295 MFSQSMDSARDVGGASGIVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVVYSVPPGCHQYKFFVDREWRHDENQPYISGEYGIVNTVFLATDPNCIPVVTPEIASGNNMDVDNEAFRRTQVRLTDGTLSELLPRISDGDVQISRQRISEFLCMHTAYELLPESGKVVALDIELPVKQAFHVLHEQGIYVAPLWDFCKGQFVGVLSASDFILILRELGNHGSNMTEEELETHTISAWKEGKSYLNSQNNGRGTVFSRGFIHAGPYDNLNAIAMKILQKGVSIVPIVHSSSEDGSFPQLLHLTSLTGILKCICRYFRHCPSSLPILQLPICALPVGTWVPKIGEPNRRPLAMLRPSASLASALNLLVQARVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVQQALQLGQDANSPYEFRSQRCQMCLRSDSLHKVMERLANPGVRRIVIVEAGSNRVEGIVSLGDIFKFFLG* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1181 491 CDD E_set_AMPKbeta_like_N 22 100 - -
Lan16g1181 491 Gene3D Immunoglobulins 21 109 IPR013783 -
Lan16g1181 491 Pfam Glycogen recognition site of AMP-activated protein kinase 21 100 IPR032640 -
Lan16g1181 491 SUPERFAMILY E set domains 21 102 IPR014756 -
Lan16g1181 491 ProSiteProfiles CBS domain profile. 355 412 IPR000644 -
Lan16g1181 491 SMART cbs_1 177 226 IPR000644 -
Lan16g1181 491 SMART cbs_1 359 407 IPR000644 -
Lan16g1181 491 SMART cbs_1 441 490 IPR000644 -
Lan16g1181 491 ProSiteProfiles CBS domain profile. 438 491 IPR000644 -
Lan16g1181 491 Gene3D - 338 491 IPR046342 -
Lan16g1181 491 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
Lan16g1181 491 SUPERFAMILY CBS-domain pair 357 490 IPR046342 -
Lan16g1181 491 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 491 - -
Lan16g1181 491 Pfam CBS domain 357 403 IPR000644 -
Lan16g1181 491 Pfam CBS domain 444 490 IPR000644 -
Lan16g1181 491 Gene3D - 149 331 IPR046342 -
Lan16g1181 491 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 491 - -
Lan16g1181 491 SUPERFAMILY CBS-domain pair 158 329 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1181 Lan-Chr16 19275126 19287799 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1181 - - gmx:100785692 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1181 16 19275126 19287799 Lan19g0553 19 9087288 9099427 LSH
Lan12g1287 12 18646357 18653778 Lan16g1181 16 19275126 19287799 PCT
Lan16g1181 16 19275126 19287799 Lan12g1287 12 18646357 18653778 PCT