Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1179 ATGAAGTCCCATTCCATGTTCAAAGCGCTTCTCTCCTTGAATCTGAATTCTCTTCCTTCACCAACCCCAAAATGCAACCCTTTTTTGCACCACTATTCATTCACATTTCCTCTCAAATTCTACACAACCACTTCAGATCCAAAATCGTTTACTGTTTCTTACCTCATCAACAATTTTGGGTTCTCCCCAGAATCTGCTCTCAAAGCTTCAAATTGTGTTCGTTTCAAGACCCAAAAAAAGCCTGATTCTGTTCTCACCTTCTTCCGAAACCATGGTTTCTCTGACCCAGATATTTATAGTGTCATCAAAAAGGAACCATGGCTCCTTTCATGTGATATCCACAAAAGGGTTTTGCCAAAGTTTGAATTTTTAAGCTCAAAGGGTGCTTCTAGATCTGACATTGTTCGTGCCGTTATGGTCAACCCCAGGTTCTTGAAATCTAGCTTGGAGAATTGTATAATCCCTGCTTATGAATTGGTAAATGGATTTCTTCAATCTGAGAAGAAAACATTTGCTTCTATAGTTGGTTGTCCTTCTTTGCTTTATAGTGATTCTGTGGCATTTAATATCAATTATTTGGTTGATAATGGTGTAGCTAGTTTAAACATTTATAGAATCCTTCGTCTTAGGCCTTTTATATTGTGTGCTAGTGATTTGAAGAATACTGTGGAGGAGTTAAAATGTTTGGGATTTGATCCGTCGAAATCATACTTTGCTGATGCAATGCTTGCGAAAAGAGCGACGAGCGAATTGCAATGGAGAGACAAAGTTGAAAACTTTAAGAAGTGGGGGTGGTCTGATGAAACAATTTTGGAAGCATTTAAGAGGCAGCCAATGTGTATGTTAACATCGAGTCAAAAAGTCGACAAGGTGATGAGATTTTGGATTAATAAATTAGGCTGGGATTCTTCTCACCTCGTCAAGGCACCAGGAATTTTCGGGTATAGTTTGGAGAAAAGGATCATTCCTAGGGCTTCAGTTATCAATTATCTTTTATCCAAAGGATTGAGAAAAGAGAGTGCTAGCTTTCTTACACCATTTTGTATGACTGATGAGTCGTTCCTGGAAAAGTATGTGACATGTTTTGATGATGAGGAAGCTTCTCAGCTATTAAAGCTATATCAGGAAAACATGGATCTTCAAGATTGTAAATGA 1155 0.381 MKSHSMFKALLSLNLNSLPSPTPKCNPFLHHYSFTFPLKFYTTTSDPKSFTVSYLINNFGFSPESALKASNCVRFKTQKKPDSVLTFFRNHGFSDPDIYSVIKKEPWLLSCDIHKRVLPKFEFLSSKGASRSDIVRAVMVNPRFLKSSLENCIIPAYELVNGFLQSEKKTFASIVGCPSLLYSDSVAFNINYLVDNGVASLNIYRILRLRPFILCASDLKNTVEELKCLGFDPSKSYFADAMLAKRATSELQWRDKVENFKKWGWSDETILEAFKRQPMCMLTSSQKVDKVMRFWINKLGWDSSHLVKAPGIFGYSLEKRIIPRASVINYLLSKGLRKESASFLTPFCMTDESFLEKYVTCFDDEEASQLLKLYQENMDLQDCK* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1179 384 Pfam mTERF 189 354 IPR003690 GO:0003690|GO:0006355
Lan16g1179 384 Pfam mTERF 85 232 IPR003690 GO:0003690|GO:0006355
Lan16g1179 384 PANTHER CGI-12 PROTEIN-RELATED 22 381 IPR003690 GO:0003690|GO:0006355
Lan16g1179 384 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Lan16g1179 384 SMART mt_12 171 199 IPR003690 GO:0003690|GO:0006355
Lan16g1179 384 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Lan16g1179 384 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Lan16g1179 384 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Lan16g1179 384 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Lan16g1179 384 Gene3D Transcription termination factor 3, mitochondrial 174 365 IPR038538 -
Lan16g1179 384 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 22 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1179 Lan-Chr16 19220614 19222427 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lan16g1179 mTERF 6.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1179 K15032 - gmx:102663414 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0050 1 281925 283442 Lan16g1179 16 19220614 19222427 PCT
Lan16g1179 16 19220614 19222427 Lan1g0050 1 281925 283442 PCT