Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1175 ATGCTATTTTTTAATTTTAAAAGTGAGCAAACAAGAGGATTGCTGATATATTTTAAGATAGAGATAAGGATGCTTAGTCATGAAGGAGAGCTTAAAATAAGCTTTGGCTATCAATGTGATAGTAGTAGAGGTATCCCTTGCAAGGTTGCCAATGACTACAAAGGCCTTCCCGTGGTCCATAGAACAAGCAGTTTCTCTTGCTTGTCTGGTGCAGGCTTAAGTGCAAATGCTACACTTGCTAACACAAACATCTGCAACGGTGTGATAGGAGAAGAAATCCTTCCAAATCTGGACTCTCCTAGATCTTTTCGTAGGGTGCCCTCTTCCCCAAGTCTTTCAAAGTTGGACATACTATCATCTTCTCTCCCGAGTAGTTTGTCAAACCTAAGTTGCAGCCCATCCACTCCAAGTGATATGCTTGAGTGTGACCCTTTTTCGTTAAAATCCATGAGTGCTCCTTCCAGAAGTGAAGGTTTTCTTAATGCTATGGAAGTTCAAGTAGCAGGAGGAGCAGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTCTTCTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCGGCTGACTTTCTGGCCGGTACCCTTTATGACACTATCATAAGTTATTTTAGTATGTTATGTTGGGATTTGGAACCAGATTCCATCGTGGCTTGTCACGATAATGATTTGGGCAGATCTTTTCAACATAAGATGGATGATAGTCTTCATGATCATCAATCTCCATTGAGATTTAAGGAAAACAACTCTAGTCTTGGATGTTTCGTGAACAATACTCCACCTTTCAAGTCAGAAGCATCACTTAAATCATTTTCACATGAGGTACTTGATAGCCTCCAACGTGCTCTCAGTCAGGCCGAGAATGACTTCTTATACATGGTTGAGCAGGAAATGGAGGAGCGTCCAGATTTAGTTTCTGTTGGATCTTGTGTTTTACTTGTGCTTCTTCACGGGAACAATTTGTATACACTTAATCTCGGTGACAGCAGAGCAGTATTGGCAACGTATAGTACATGTGACAAAATGAATGGGAATAAGAGAATGGGAGCTGTCCAGCTTACAGATAGTCATACTGTTGACAATGAAGTCGAAAGAGCTGAACTTCTTGTCAGTCATCCCGATGATCCTAATGCCATTGTAGCAGGGAAAGTGAAAGGAAAACTGAAGGTTACTCGTGCTTTTGGAGTTGGCTACTTGAAAAAGAAAAATCTGAATGATGCATTGATGGGAATCCTTCGAGTTCGTGATCTTAAAAGCCCGCCATATGTTTCCACTCAACCATCACTGAATGTGCATAAAATCTCAAACTCTGATCAATTTGTTATAGTTGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAGGCAGTAAAGCATGTTGAGTCATATATCATGAACAATCCTTCTGGTGATCCTGCAAAATTTCTCATTGAGCAGCTTATAGCAAGAGCAGCAGATTCTGCAGGTTTCAGCATGGAAGAGTTGATGAATATTCCGGCCGGGAGGAGGAGGAAGTACCATGATGATGTGACTGTAATTGTGATCATCCTTGGGATGAATAAACGGACTTCAAAGGCATCAATTTGCATCTGA 1635 0.4104 MLFFNFKSEQTRGLLIYFKIEIRMLSHEGELKISFGYQCDSSRGIPCKVANDYKGLPVVHRTSSFSCLSGAGLSANATLANTNICNGVIGEEILPNLDSPRSFRRVPSSPSLSKLDILSSSLPSSLSNLSCSPSTPSDMLECDPFSLKSMSAPSRSEGFLNAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYFSMLCWDLEPDSIVACHDNDLGRSFQHKMDDSLHDHQSPLRFKENNSSLGCFVNNTPPFKSEASLKSFSHEVLDSLQRALSQAENDFLYMVEQEMEERPDLVSVGSCVLLVLLHGNNLYTLNLGDSRAVLATYSTCDKMNGNKRMGAVQLTDSHTVDNEVERAELLVSHPDDPNAIVAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRDLKSPPYVSTQPSLNVHKISNSDQFVIVGSDGLFDFFSNDEAVKHVESYIMNNPSGDPAKFLIEQLIARAADSAGFSMEELMNIPAGRRRKYHDDVTVIVIILGMNKRTSKASICI* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1175 544 Pfam Protein phosphatase 2C 291 490 IPR001932 -
Lan16g1175 544 SMART PP2C_4 150 529 IPR001932 -
Lan16g1175 544 Gene3D - 135 540 IPR036457 -
Lan16g1175 544 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 24 543 - -
Lan16g1175 544 ProSiteProfiles PPM-type phosphatase domain profile. 159 531 IPR001932 -
Lan16g1175 544 PANTHER PROTEIN PHOSPHATASE 2C 24 543 IPR015655 GO:0004722|GO:0006470
Lan16g1175 544 SUPERFAMILY PP2C-like 173 532 IPR036457 -
Lan16g1175 544 CDD PP2Cc 172 531 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1175 Lan-Chr16 19122673 19126657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1175 29 544 PP2C-type Phosphatase Gene Family AT3G16560 62.452 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1175 - - gmx:100808304 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0057 1 310480 313154 Lan16g1175 16 19122673 19126657 PCT
Lan16g1175 16 19122673 19126657 Lan1g0057 1 310480 313154 PCT