LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan16g1171	ATGGACCCTCGATCATACGCAGTCGTAGAAGCAGCGGCGGCGGCCGCACCGGAAATGAAAATGACCGTTCCACCGTCCGACACCACCGCCAGTGCACTCGATTGCAACCTCACTTCTCTCTGTGACCATGTCCAAATTGAAGGCTTCAATTCCGGTTCTTTCTCCGATATCATCGTTCATGCTATGGGATCCACTTTCCGCCTCCATCGCCTTCTTATCTCTCGCAGTTCCTATTTCCGGAACATGTTGCATGGGCCTTGGAAAGAAGCAACTGCTCCTGTTGTTAATCTTCATGTGGATGATAGTAATGTTAATGAAGAAGCTATTACTATGGCTCTGGCTTATCTTTATGGACATCATCCTAAGCTTAATGATAATAATGCATTTCGTGTTCTTGCCGCTGCGTCCTTTCTAGATCTTCAGGATTTGTCCGCAATATGTACCGATTTCATTATATCTGAGCTCTGGACTTCAAACTTCTTGGCTTATCAGATGTTTGCGGAGAACCAAGACTATGGCGTTCATGGCGAGCGTGTTCGGACTGCTTGTTGGGGGTACCTCTGTCAAAGTGGTGGCGTGGAATTGAAAGAGGCGCTTCCTAAACTTTCATCACAAACATTGCATACACTACTGACCAATGATGAACTGTGGATACCAAGTGAAGAGAAAAGGTTTGAATTGGCTTTGTACGCATTCTTGGCAAAAAATGCTCACCGGAAGGCCAAACATCCTGAGCATGGAAATTCTGGTTCTGAGTCTGGAACTGATATTCATTATGATTCTGATAACTCTAAGGGGAAAGGTGTCATTGATGGCTGGATGGATAAAGGGTTGGAAACTGATCTGGGGAAAATGAGTCTGAAAAGTAATGAAAAGGATCCTAATGCTCATAATCTTGTAGTTGAGCTTGCGGACTTCAACAATGGGCTTTCTAGTTCCAATCAAAAGGCTGAAGAAACTTCATCTACCAGTTCATCATATGTGAAACCAACATATTCTTCCAACATGGAAGGACCTTCATCATTTGGTGATTCATTATCTGATACAGATGGGAATAAAACATCATGGTCTTATGTTGAGATGCCTGTTGGTGCTGGAGCTGCTGGATTGGCTATTGAAGGGTCATCCGAGGAAGGACCTTTCTATCATTTGGATAACAACAGTTGGTTAGTTAGGGATCAATCAAGGCAATGCTTTTCATCTAATTCTTCTGTTAATGGCCTGACATCCAGTGACTGGGGAAGATATGGAGCACCTTTTTTCTCGTGGGGTGGACGGGTTGTTGGGAAAAGACATCTCCAGCCTCACTCTAAAGAAAACTATGGAGGTCACGGAGATGAATATGATGCATTTTTTAATATATTTGAAGGGGGGTCTCTTTTATACTGCAATATGTCTTTTGAGGCACTTCTCAATGCCAGAAAACAACTTGAAGAGTTAGGTTTCCCTTGCAAAGCTGTAAATGATGGTCTTTGGCTGCAGATGCTTCTTAGTCAGAGAGTGCAAGAAATTGCTGCTGATACATGCAAAAGTTGTTGCCTTCTGAGTATGGCCTGCACTTGCCGTCAGCCATTTGCATTTCCACATGGGGCTACTACCACTGGTTATTACATGCAAGAACATAACCAAAATATTATGCCGGGTAATGTGGGAAATATATATGTTGCTGAATCTTCTCAGGGTGAAGGAAATGGCATTTTTAGACCTGTACGTGTACATGTCAGAGGTGCCATTGATGGGCTTGTTGGTATTAGTCGTGGAACTACATTTGTTCCAGCAGCTTCTTCGCCTCCTACACGATTTGTCTTTTCTCGTGTACCAATTGGTGCTGGCAACAGAAACTACCCACAATCTGCAGCTAATGATGATTCAGAGACTCGGGCTGATCACAATGGTGACCTGTCTGGAGATGGTTTGACAGCTTTGGTTGGCTTAAGTCAAGGTGGGAGTAATGGGACAAATTCACATGGTCAAAGGGGATATGAAATGGGCCAGCAAAGCAGAATGTCTGAAAATACTTCTGGAGGCCCAAGTACTGGCGGCATTCCGATGCAGATGTTAGAGACACCAGAACACAACATCGGAATGGAATGGGAGAATGCCAACAATTCTTCTATATCATTGGATTTGAAAACACCTTTAAACCATTTCCCTCCTTTTCGATTTGGAGTGCAGTTCGAGGATGTGCACAGGCTTGGTGACGGACAGGTTAAGCATTCTCCTGAAACATTCTATGCTGGTTCTTTATGGAAGGTCAGTGTACAGGCATTTAATGATGAGGACCCTCAGGGAAGGCGAACACTAGGGTTGTTTCTTCATCGTCGGAAGGCAGAGATTACTGATATATATAGAAAGGTGCACATGTATGTCGACTCTCGCGAAAAGGTGACTGCTCGCTATCAGTTGATTTGTCCCTCAAAGAGGGAAGTGATGGTGTTTGGAAGCTTTAAACAAACAGGCACTCTTCTGCCTAAAGCTCCAAAAGGATGGGGTTGGCGAACTGCTCTGCTATTTGACGAACTTGGTGATCTTCTCCAAAACGGGGCCCTAAGGATCATCGCTGTAGTACAGCTTGTTTGA	2580	0.4415	MDPRSYAVVEAAAAAAPEMKMTVPPSDTTASALDCNLTSLCDHVQIEGFNSGSFSDIIVHAMGSTFRLHRLLISRSSYFRNMLHGPWKEATAPVVNLHVDDSNVNEEAITMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLSAICTDFIISELWTSNFLAYQMFAENQDYGVHGERVRTACWGYLCQSGGVELKEALPKLSSQTLHTLLTNDELWIPSEEKRFELALYAFLAKNAHRKAKHPEHGNSGSESGTDIHYDSDNSKGKGVIDGWMDKGLETDLGKMSLKSNEKDPNAHNLVVELADFNNGLSSSNQKAEETSSTSSSYVKPTYSSNMEGPSSFGDSLSDTDGNKTSWSYVEMPVGAGAAGLAIEGSSEEGPFYHLDNNSWLVRDQSRQCFSSNSSVNGLTSSDWGRYGAPFFSWGGRVVGKRHLQPHSKENYGGHGDEYDAFFNIFEGGSLLYCNMSFEALLNARKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKSCCLLSMACTCRQPFAFPHGATTTGYYMQEHNQNIMPGNVGNIYVAESSQGEGNGIFRPVRVHVRGAIDGLVGISRGTTFVPAASSPPTRFVFSRVPIGAGNRNYPQSAANDDSETRADHNGDLSGDGLTALVGLSQGGSNGTNSHGQRGYEMGQQSRMSENTSGGPSTGGIPMQMLETPEHNIGMEWENANNSSISLDLKTPLNHFPPFRFGVQFEDVHRLGDGQVKHSPETFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDIYRKVHMYVDSREKVTARYQLICPSKREVMVFGSFKQTGTLLPKAPKGWGWRTALLFDELGDLLQNGALRIIAVVQLV*	860

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan16g1171	859	MobiDBLite	consensus disorder prediction	644	679	-	-
	Lan16g1171	859	PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN	17	859	-	-
	Lan16g1171	859	MobiDBLite	consensus disorder prediction	612	679	-	-
	Lan16g1171	859	MobiDBLite	consensus disorder prediction	241	263	-	-
	Lan16g1171	859	Pfam	BTB/POZ domain	49	153	IPR000210	GO:0005515
	Lan16g1171	859	ProSiteProfiles	BTB domain profile.	55	125	IPR000210	GO:0005515
	Lan16g1171	859	SMART	BTB_4	55	155	IPR000210	GO:0005515
	Lan16g1171	859	MobiDBLite	consensus disorder prediction	310	348	-	-
	Lan16g1171	859	SUPERFAMILY	POZ domain	49	153	IPR011333	-
	Lan16g1171	859	Gene3D	Potassium Channel Kv1.1; Chain A	27	188	IPR011333	-
	Lan16g1171	859	PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN	17	859	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Lan16g1171		BTB	1.4e-13	CL0033

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan16g1171	-		-	adu:107483601	1457.2