Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1148 ATGGCCTCTTCTTCTTCTAGTAGCTTAGACACATCTAAAACCTCTTCATACCCCAACAACAACCAAACCTTATCAACACACTCATTCATGACAACCTCATTCTCTGACCTTCTTACTTCTCCCACTGATCACAACAACATCAACAACAACCTCGGATTCTCCGAAAGGCTTATGGGGTTGTCTGGTATTGTTGGGTCAAGTGTTCCAAAATTTAAGTCAACACCACCTCCTTCTCTCCCTCTTTCTCACTTTCCCATTTCTCCTTCTTCTTACTTTGCTATGCCTCATGGTTTCAGCTTTTCTGAGCTTCTTGATTCTCCGGTTCTCCTTAACTCTTACAACATTTTGCCATCTCCAACAACTGGAGCACTTGTTGCTCAAGGTTTCAATTGGAAGAGTAATCATGGGGAAAATAAGCAGAATAATATTAAAGAAGAAGAAAAAAACTTCTCAAGTTTCTCATTCCCAACTCAACCACAGCCTCAAGTTCAATCTTCAAACATTACAAATCAAACTCAACAACAGGCATGGACTTTTCATGAAGCAACTAAGCAAGAGAGTATAGTAAAAACTGAATACTCTTCTATGCAGAGTTTCACCCCTGAGATTTCTAATGTCCAAAGTAACCACAACACTAATTTTCAACCTCAGATCTTAAGTAGAAGATCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAACAAGTGAAAGGGAGTGAAAGAAGTTACTACAAATGCACATACCCCAATTGCCCAACAAAGAAAAAGGTTGAAAGGGATTTAGATGCCCAAATTACTGAGATAATTTACAAAGGTTCTCATAACCATCCTAAGCCTCAGGCTACAAGGAGAAACTCATCTTCTCTTGTTATTGCTCCTTCAAAACATGTTAGAAATGAGGTACAAGATCAATCATATGTCACACATGTCAGTGGACAAATGGATTCAGCAGCAACTCCTGAGAACTCATCAGTGTCAATCGGAGATAATGATTATGAGCATAACTCTCAGAGGAGTAAATCAGGAGCAAATGAGATTGATGAAGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGAGAAAATGAGGGTATATCAGCACTTGGAAGTAGAACAGTGAGAGAGCCCAGGGTTGTAGTTCAGACAACCAGTGACATTGATATTCTAGATGATGGGTATAGATGGAGGAAATATGGGCAGAAAGTAGTCAAGGGAAATACAAATCCAAGGAGTTACTACAAATGCACATTCCCAGGATGTTCAGTGAGGAAACATGTAGAGAGGGCCTCACAAGATTTAAGTGCAGTGATCACAACCTATGAAGGAAAGCACAACCATGATGTCCCTGCTGCACGTGCAAGTGGTAACCATTCTATCAAAAGATCACTGCCAAATGATACCACAAACAACACCATCACTACTGCAGTTACTGCCATAAGGCCCTCTAATGTTACTCAGTACAATAATAATTCCTACAACAATTCTATTCAGGATTTTAGACCACAAGAAGGGCAATCATACTTCAACCAATGGATGCTGCCGAGTCCAAGAAGTTTCGGTTTCTCTGAGTTTGAGAATCTAATGGAGTCTTATATGGACGAGTGA 1608 0.3993 MASSSSSSLDTSKTSSYPNNNQTLSTHSFMTTSFSDLLTSPTDHNNINNNLGFSERLMGLSGIVGSSVPKFKSTPPPSLPLSHFPISPSSYFAMPHGFSFSELLDSPVLLNSYNILPSPTTGALVAQGFNWKSNHGENKQNNIKEEEKNFSSFSFPTQPQPQVQSSNITNQTQQQAWTFHEATKQESIVKTEYSSMQSFTPEISNVQSNHNTNFQPQILSRRSDDGYNWRKYGQKQVKGSERSYYKCTYPNCPTKKKVERDLDAQITEIIYKGSHNHPKPQATRRNSSSLVIAPSKHVRNEVQDQSYVTHVSGQMDSAATPENSSVSIGDNDYEHNSQRSKSGANEIDEDEPDAKRWRIEGENEGISALGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNTNPRSYYKCTFPGCSVRKHVERASQDLSAVITTYEGKHNHDVPAARASGNHSIKRSLPNDTTNNTITTAVTAIRPSNVTQYNNNSYNNSIQDFRPQEGQSYFNQWMLPSPRSFGFSEFENLMESYMDE* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1148 535 ProSiteProfiles WRKY domain profile. 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan16g1148 535 MobiDBLite consensus disorder prediction 152 173 - -
Lan16g1148 535 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 51 534 - -
Lan16g1148 535 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan16g1148 535 SUPERFAMILY WRKY DNA-binding domain 222 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan16g1148 535 MobiDBLite consensus disorder prediction 312 359 - -
Lan16g1148 535 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan16g1148 535 MobiDBLite consensus disorder prediction 334 359 - -
Lan16g1148 535 MobiDBLite consensus disorder prediction 1 24 - -
Lan16g1148 535 Pfam WRKY DNA -binding domain 391 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan16g1148 535 Pfam WRKY DNA -binding domain 224 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan16g1148 535 Gene3D WRKY domain 208 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan16g1148 535 Gene3D WRKY domain 375 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan16g1148 535 SMART WRKY_cls 390 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan16g1148 535 SMART WRKY_cls 223 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan16g1148 535 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 51 534 IPR044810 GO:0003700
Lan16g1148 535 MobiDBLite consensus disorder prediction 447 468 - -
Lan16g1148 535 MobiDBLite consensus disorder prediction 312 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1148 Lan-Chr16 18661140 18672392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1148 30 490 WRKY Transcription Factor Family AT2G38470 45.361 7.89e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan16g1148 WRKY 1.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1148 K13424 - gmx:100127385 676.781