Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1142 ATGTCGCTTGGAGAAATTGCTTCCAGTTACGCTGCTTTGGTCCTTCACGATGATCAAATTCCTATTACTGCTGACAAAATCTCCGCCGTATTGAAAAGCGCCAATGTTCAAGTTGAATCTTATTGGCCCATCTTAATTGCTAAGCTTGCTGAGAAGCGTAATCTCGGGGATTTGATAGCGAGTGCTGGAGGCGGTGGAGCACCAGTAGCTATTGCAGCAGCACCAGTTGCTGCTGCAGCTGGCGGCGCTGCTGCTGCTGCTGCCGCCGCTCCAGCTCCTCAGCAGGAAGAACCCAAAGAAGAGAGCGATGATGATATGGGATTCGGTTTGTTTGATTAG 339 0.5015 MSLGEIASSYAALVLHDDQIPITADKISAVLKSANVQVESYWPILIAKLAEKRNLGDLIASAGGGGAPVAIAAAPVAAAAGGAAAAAAAAPAPQQEEPKEESDDDMGFGLFD* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1142 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 103 - -
Lan16g1142 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lan16g1142 112 CDD Ribosomal_P1 5 111 - -
Lan16g1142 112 Gene3D - 1 63 IPR038716 -
Lan16g1142 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Lan16g1142 112 MobiDBLite consensus disorder prediction 87 112 - -
Lan16g1142 112 PRINTS Ribosomal protein P2 signature 25 36 IPR001859 GO:0003735|GO:0005840|GO:0006412
Lan16g1142 112 PRINTS Ribosomal protein P2 signature 84 98 IPR001859 GO:0003735|GO:0005840|GO:0006412
Lan16g1142 112 PRINTS Ribosomal protein P2 signature 99 110 IPR001859 GO:0003735|GO:0005840|GO:0006412
Lan16g1142 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1142 Lan-Chr16 18472052 18473663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1142 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 53.043 1.30e-34 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1142 K02942 - sly:101249479 115.931