Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1140 ATGACAACGAATTCTACTTTATCTCTTTCTCTCACTCCTTCTTCTTCTTCTTCTTATTATTCCTCAAAGGATAAGCTTCAATTTCTAGCTTCATCAAAACGATGCGTTTCATTTTCATCACTTCCCATTCTCTTAACTTATAAAGCTAGGGTTCTAACACCGTTTTCAGCATTAGTAACAGAACGTGAAAACGACGTCGTTTCAAACGAAGAAGAAAAAGAAGAAGAAGAAGAACAATGGAAGAAACCAATAGCTACTGAAGTTTACGTTTGTAACATTCCAAGAAGCATTGATTCTGATTATTTACTTAATTTGTTCAAGCCTCATGGTGATGTTTTATCTGTTGAGGTTAGCCGGAATGCTGAGACTGGTGAAAGTAAAGGGTGCGCTTATGTCACATTGGGATCTATTAACTCAGCAAGAAATGCAGTTTCTGCATTGGATGGATTGGATGTTGGTGGGCGCGAAATGCGGGTTAGATTTTCGGTTGAGATGAATCGTAGAGGGAAGAATCTCAAGATACTGAACTCATCACCCAGGAAAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGAAATCTTCCCAGGCCTATTAGGCCTGAAGAATTAAGACATCTCTTTGTTAAATATGGTACTGTGACAAGTTTAAGGATACTGATAGATCAGAGGGAGGGGAGAACCCGAGTCTACGCGTTTGTCTCTTTCCTTACAGCGGGAGAACGTGATGCAGCAATGTCCATCAATGGAATAGACTTTGGTGGCCGTAAACTAGTGGTTAGAGAAGGAGTCGACAAGTCCGAGTTAAGCTGA 816 0.3995 MTTNSTLSLSLTPSSSSSYYSSKDKLQFLASSKRCVSFSSLPILLTYKARVLTPFSALVTERENDVVSNEEEKEEEEEQWKKPIATEVYVCNIPRSIDSDYLLNLFKPHGDVLSVEVSRNAETGESKGCAYVTLGSINSARNAVSALDGLDVGGREMRVRFSVEMNRRGKNLKILNSSPRKVIYYEGPHKLYVGNLPRPIRPEELRHLFVKYGTVTSLRILIDQREGRTRVYAFVSFLTAGERDAAMSINGIDFGGRKLVVREGVDKSELS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1140 271 Coils Coil 59 79 - -
Lan16g1140 271 SUPERFAMILY RNA-binding domain, RBD 186 268 IPR035979 GO:0003676
Lan16g1140 271 Gene3D - 170 270 IPR012677 -
Lan16g1140 271 Gene3D - 56 169 IPR012677 -
Lan16g1140 271 MobiDBLite consensus disorder prediction 1 20 - -
Lan16g1140 271 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 17 269 - -
Lan16g1140 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 259 IPR000504 GO:0003723
Lan16g1140 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 158 IPR000504 GO:0003723
Lan16g1140 271 PANTHER OS02G0815200 PROTEIN 17 269 - -
Lan16g1140 271 SMART rrm1_1 190 262 IPR000504 GO:0003723
Lan16g1140 271 SMART rrm1_1 87 160 IPR000504 GO:0003723
Lan16g1140 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Lan16g1140 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Lan16g1140 271 SUPERFAMILY RNA-binding domain, RBD 81 171 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1140 Lan-Chr16 18462329 18464745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1140 88 269 Eukaryotic Initiation Factors Gene Family AT3G16380 33.152 2.96e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1140 - - lang:109345739 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0812 4 10127236 10129765 Lan16g1140 16 18462329 18464745 LSH