Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1134 ATGGATTTGATTCAACAAGTTAAAGGGTATTCTGATAGCAGAGAAGAAGAAGAAGAATTTGATGAGGAAGTAGCAGCAACTGCAGAAGAAGAAGAAGAAGATAATATTACAATCCCAAGAGAAGAAAGTAGTAGCAGGTTACATGAACAAGATGCAGCAACTTCCAACTACAATTTGATGATTCAAAGAAAACAGCAGCATCAGAAGTTAGAGTTGTTGGATTTGTCACTAGGAAGTAACAAAAACAAGAACAATAATGAAGCAAAATTTCAACAAGGAGTAGTAATTGGTGGTGGTTGTGGAAGTACTACTACTCCTAATGATGCCACTTGTTCTTCATCAATATCTTCAACCAACAATGAGGGAAGAATTAGTAGTAATAATAATAATGTGGAGAAAGAACACATGTTTGATAAAGTTGTAACACCAAGTGATGTAGGGAAATTGAACAGACTTGTGATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCATCATCAAATGAAAAGGGTCTTCTCTTAAACTTTGAAGACAGAAATGGGAAATTATGGAGGTTTAGGTACTCTTATTGGAATAGTAGTCAAAGCTATGTTATGACAAAAGGATGGAGCCGTTTTGTTAAGGATAAGAAGCTTGATTCTGGTGACATTGTTTCATTCAAACGTGGCGTTGGTGATTTAGATAGACATAGATTGTATATAGATTGGAAAAGAAGAAGTGATAATCATCATCATGCTCATAATAATAATAATCTTCTTCTTCATGATCCTTCACAAACAACAATTATCTCACCCTTGTTTCTTCCAAATCATTATTCTATTCCTTGGGGTGGTGGAAGATTATACTCTTTACCTTCTCCGAATGCAACAACTCCTACTACTACTACTACTATGCTTCCTCCTCGCCACAATAACGATCATTTTCATCATAGCTTCAACTATAATAGCACTATGTATAATACCTCTCATCAACAAGAACTACAATTTCATCAGCAATACTATGATGGTTGCAGTGGAAGTGGACTAGGTTACTTAAGGTCAACACCATCAATGTCAATGCATCAAATTGGTGACCAAAGCTTGCAAGATATGAGAGGGAATATTATTGCTCCTATGATCATTGATTCTGTGCCAGTTACTTATCAACAAAATCCACAAAATGGTGGTGTAGGTATTGCTAGTAGTAGTGCTAGTAATTCAGGAAAAATGTTAAGGCTATTTGGGGTGAACATGGAATGTTCTTCTTCATCACCAAATGATGATTCAAAATAA 1278 0.3521 MDLIQQVKGYSDSREEEEEFDEEVAATAEEEEEDNITIPREESSSRLHEQDAATSNYNLMIQRKQQHQKLELLDLSLGSNKNKNNNEAKFQQGVVIGGGCGSTTTPNDATCSSSISSTNNEGRISSNNNNVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDSGDIVSFKRGVGDLDRHRLYIDWKRRSDNHHHAHNNNNLLLHDPSQTTIISPLFLPNHYSIPWGGGRLYSLPSPNATTPTTTTTMLPPRHNNDHFHHSFNYNSTMYNTSHQQELQFHQQYYDGCSGSGLGYLRSTPSMSMHQIGDQSLQDMRGNIIAPMIIDSVPVTYQQNPQNGGVGIASSSASNSGKMLRLFGVNMECSSSSPNDDSK* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1134 425 SMART B3_2 137 242 IPR003340 GO:0003677
Lan16g1134 425 ProSiteProfiles B3 DNA-binding domain profile. 137 242 IPR003340 GO:0003677
Lan16g1134 425 Gene3D - 130 252 IPR015300 -
Lan16g1134 425 MobiDBLite consensus disorder prediction 105 128 - -
Lan16g1134 425 MobiDBLite consensus disorder prediction 1 48 - -
Lan16g1134 425 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 102 419 - -
Lan16g1134 425 MobiDBLite consensus disorder prediction 15 37 - -
Lan16g1134 425 CDD B3_DNA 135 224 IPR003340 GO:0003677
Lan16g1134 425 Pfam B3 DNA binding domain 137 241 IPR003340 GO:0003677
Lan16g1134 425 SUPERFAMILY DNA-binding pseudobarrel domain 134 241 IPR015300 -
Lan16g1134 425 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 102 419 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1134 Lan-Chr16 18407967 18410472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1134 131 418 RAV Transcription Factor Family AT2G46870 48.148 2.42e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan16g1134 B3 1.2e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0818 4 10196289 10198795 Lan16g1134 16 18407967 18410472 LSH
Lan16g1134 16 18407967 18410472 Lan9g1021 9 17257480 17259980 PCT
Lan9g1021 9 17257480 17259980 Lan16g1134 16 18407967 18410472 PCT