Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1126 ATGGATGAAACTTCTTCAATATCATCTGAGAATTTAGTTGAATCTGAATCTCCTGCAGTTGAAGTAACAAGCAAAATCATGATAATGGGTGTAATAATCTTATTCATGATTGTTGTAATCTCTCTTTTCATCCACCTCTATGCAAAATTCTGCTTAAGTATTGGTGGAGAAGCCACTGCTCCTAACTCAAACCGCCACCGCCGCCGCCGCTTTATCTTTTCCCCTGGCCAAGAACCACCCACCAATGGTGCCCTTAGGAAGGGACTTGACCCTTTAGTGCTTAGGTCACTGCCCATATTAGTGTTCCAATCTCAAGAGTTTAAGGATGGTTTGGAATGTGCAGTTTGTTTATGTGATGTTGTTGAAGGAGAAAAAACAAGATTTTTACCTAAATGCAATCATGGGTTTCATGTAGATTGTATTGATATGTGGTTTCAATCACATTCTACATGTCCTCTTTGTAGGGACCCTATTGGTTTTGAATCATGTAAGTCTTGTGATAATAGTGGTTCAAATCATGAACAAAATGCCTCAGATAATGAATCATTAGAAGAAGAAGCAGAAAATTCTCCAACTTTTCCTATAAATGTTCTTATTTGGGGGAACCAAACTCAAGTTAATAGTTCTATTGGTACACTTTTAGAAGAAAGTAGTAGTAGTAATTCTACTACAAGTACTAGCACTAGTACTAGTTATAGTAGTAGTAATAGACATGATGGAAGGTTGGTGATTGATATACCAAGTGAGACCACTTCATCCTTTGTATCAACTTCTGCAAGTGGGTTTGCTGAAGATGATTTGAAATCGCCGATATCCGCAAGGCTAAGATCATTGAAGAGGCTTTTAAGCAGAGATAGAAGGTTGTATCCTATGAGTTCGAGTTATGTGGATGTGGAACAAGATGGGGAAACAGCAAGGTAG 921 0.3822 MDETSSISSENLVESESPAVEVTSKIMIMGVIILFMIVVISLFIHLYAKFCLSIGGEATAPNSNRHRRRRFIFSPGQEPPTNGALRKGLDPLVLRSLPILVFQSQEFKDGLECAVCLCDVVEGEKTRFLPKCNHGFHVDCIDMWFQSHSTCPLCRDPIGFESCKSCDNSGSNHEQNASDNESLEEEAENSPTFPINVLIWGNQTQVNSSIGTLLEESSSSNSTTSTSTSTSYSSSNRHDGRLVIDIPSETTSSFVSTSASGFAEDDLKSPISARLRSLKRLLSRDRRLYPMSSSYVDVEQDGETAR* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1126 306 MobiDBLite consensus disorder prediction 213 239 - -
Lan16g1126 306 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Lan16g1126 306 PANTHER RING-H2 FINGER PROTEIN ATL3 14 300 - -
Lan16g1126 306 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 300 IPR044675 -
Lan16g1126 306 Pfam Ring finger domain 112 155 IPR001841 -
Lan16g1126 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 159 IPR013083 -
Lan16g1126 306 SUPERFAMILY RING/U-box 93 160 - -
Lan16g1126 306 SMART ring_2 113 154 IPR001841 -
Lan16g1126 306 CDD RING-H2_EL5_like 112 155 - -
Lan16g1126 306 MobiDBLite consensus disorder prediction 213 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1126 Lan-Chr16 18334676 18351157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1126 1 286 C3H Transcription Factor Family AT1G53820 38.608 2.62e-60 193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1126 16 18334676 18351157 Lan19g0590 19 11094415 11094972 LSH
Lan4g0825 4 10237167 10238747 Lan16g1126 16 18334676 18351157 LSH
Lan12g0872 12 15792815 15793797 Lan16g1126 16 18334676 18351157 PCT
Lan16g1126 16 18334676 18351157 Lan12g0872 12 15792815 15793797 PCT
Lan16g1126 16 18334676 18351157 Lan11g0590 11 4691908 4692964 PCT
Lan11g0590 11 4691908 4692964 Lan16g1126 16 18334676 18351157 PCT